View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355-INSERTION-9 (Length: 684)
Name: NF1355-INSERTION-9
Description: NF1355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355-INSERTION-9 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 384
Target Start/End: Original strand, 28759624 - 28760000
Alignment:
| Q |
8 |
gaaaagcctcaaactttaaggtgaagaaagcaattaggagttgaaatgatgagtggttcctgccagttgcagtgacaccactgtattaggaaaactatca |
107 |
Q |
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| T |
28759624 |
gaaaagcctcaaactttaaggtgaagaaagcaattaggagttgaaatgatgagtggttcctgccagttgcagtgacaccactgtattaggaaaactatca |
28759723 |
T |
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| Q |
108 |
atgcaaaatgtggtacatatatataaatgaattccaccaaaaaagaacatcatcaaaatcaaacccacttagtagtagtattaaatatttattgataaaa |
207 |
Q |
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| T |
28759724 |
atgcaaaatgtggtacatatatataaatgaattccaccaaaaaagaacatcatcaaaatcaaacccacttagtagtagtattaaatatttattgataaaa |
28759823 |
T |
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| Q |
208 |
agctaagtctatgaaaaaggaaaagcaaaattgaacagttacagtaaacnnnnnnnagaccaaaccccaaaaactacttactaattaagtaaatcatcga |
307 |
Q |
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| T |
28759824 |
agctaagtctatgaaaaaggaaaagcaaaattgaacagttacagtaaactttttttagaccaaaccccaaaaactacttacttattaagtaaatcatcga |
28759923 |
T |
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| Q |
308 |
ttttgcttaatctaaacaaaaatcagtagtacattgttttagtttgatatacagaaccattatctttaaaacacgga |
384 |
Q |
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| T |
28759924 |
ttttgcttaatctaaacaaaaatcagtagtacattgttttagtttgacatacagaaccattatctttaaaacacgga |
28760000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 380 - 684
Target Start/End: Original strand, 28760047 - 28760343
Alignment:
| Q |
380 |
acggaacgtacacgcctttaaccagatgtgtccgtgctacaaagtcaattaaacatnnnnnnnnnnnnnnngaatactttaatttgcagaaactttaact |
479 |
Q |
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| T |
28760047 |
acggaacagacatgcctttaaccagatgtgtcagtgctacaaagtcaattaaacttcaaaaag--------gaatactttaatttgcagaaactttaact |
28760138 |
T |
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| Q |
480 |
tcatcataactgccnnnnnnnnttcttgaaacaatcacattcacagaaagtccacaaaaatggacaagaaagttcattattattattccaaaataagaca |
579 |
Q |
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| T |
28760139 |
tcatcataactgccaaaaaaaattcttgaaacaatcacattcacagaaagtccacaaaaatggacaagaaagttcattattattattccaaaataagaca |
28760238 |
T |
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| Q |
580 |
tttcatatnnnnnnnnnnnnnnnnnnnnnnnngaattgtaatttcactcaaaaccgattcagattattatgacgtaattaaattgtgttcttctgcagta |
679 |
Q |
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| T |
28760239 |
tttcatataaaaaaccaaaaaaatataaaaaagaattgtaatttcactcaaaaccgattcagattattatgacgtaattgaattgtgttcttctgcagta |
28760338 |
T |
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