View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13550_low_1 (Length: 473)
Name: NF13550_low_1
Description: NF13550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13550_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 72 - 446
Target Start/End: Complemental strand, 12530502 - 12530128
Alignment:
| Q |
72 |
tggcgaatttctagtcattagtctatttgatcaaaaaatatcttcatttactaaatgattggactcaagtggttaacaagttcatcaaatgacaaatccg |
171 |
Q |
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| T |
12530502 |
tggcgaatttctagtcacccgtctatttgaccaaaaaatatcttcatttactaaatgattgaactcaagtgattaacgagttcatcaaataacaaatcca |
12530403 |
T |
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| Q |
172 |
atannnnnnngtcaaactatacttacctcacgattaaattctaaattaacagggccacttctcataagaatcaaagggttnnnnnnnntatcttcactct |
271 |
Q |
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||| |||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12530402 |
atattttttggtcagactatacttacctcgctattaaattctaaattaacagggccacttctcataagaatcaaagggttaaaaaaaatatcttcactct |
12530303 |
T |
|
| Q |
272 |
aaaataaataatgaaattattactgccgatcaaccaaaagactcaaacttttttaatgcagaatttccatacgtaacgcatgcaatgtgaaccgacaaag |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12530302 |
aaaataaataatgaaattattactgccgatcaaccaaaagactcaaacttttttaatgcagaatttccatacgtaacgcatgcaatgtgaaccgacaaag |
12530203 |
T |
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| Q |
372 |
aagggactgtatgaattcattttagggaatcaaacacatgcacataacacattcagcttatatacttttcatatt |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12530202 |
aagggactgtatgaattcattttagggaatcaaacacatgcacataacacattcagcttatgtacttttcatatt |
12530128 |
T |
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