View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13550_low_2 (Length: 424)
Name: NF13550_low_2
Description: NF13550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13550_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 5 - 301
Target Start/End: Original strand, 8154974 - 8155270
Alignment:
| Q |
5 |
aaaataaaatctgactatataactagtttggattacatggaaatggattatactttatttttgagtctttgcattcgaatgtcctcaagtataagacgtg |
104 |
Q |
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| T |
8154974 |
aaaataaaatctaactatttaactagttttgattacatggaaatggattatactttatttttgagtctttgcattcgaatgtcctcaagtataagacgtg |
8155073 |
T |
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| Q |
105 |
tctctctgcgtgcctcattactacattgtctataacatagtactannnnnnnggtagagatctctaattctttcatctcatccaaaactatttgtctgtt |
204 |
Q |
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| T |
8155074 |
tctctctgcgtgcctcattactacattgtctataacattgtaccatttttttggtagagatctctaattctttcatctcatctaaaactatttgtctgtt |
8155173 |
T |
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| Q |
205 |
cctgcactctatgctgcagaaaccttgatctcccctgcataataattaccaacataatgtttcatcagatcaaggttaaatgtatgagatgttaatt |
301 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8155174 |
cctgcactctatactgcagaaaccttgatctcccctgcataataattaccaacataatgtttcatcagatcaaggttaaatgtatgagatgttaatt |
8155270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 336 - 406
Target Start/End: Original strand, 8155307 - 8155377
Alignment:
| Q |
336 |
tgacactagatgctaatatcatcttatttttagtatggatttgatagaattatttctagaaaggttagatc |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8155307 |
tgacactagatgctaatatcatcttatttttagtatggatttgatagaattatttctagaaaggttagatc |
8155377 |
T |
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