View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13551_low_3 (Length: 252)
Name: NF13551_low_3
Description: NF13551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13551_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 48617315 - 48617425
Alignment:
| Q |
124 |
caaaattgtaaagttgattatccgcaaagtatgctatgaggatgccagatacacacacaacaacagctaccaagtcccagatgttcaaaggctgatttac |
223 |
Q |
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| T |
48617315 |
caaaattgtaaagttgattatccgcaaagtatgctatgaggatgccagatacacacacaacaacagctaccaagtcccagatgttcaaaggctgatttac |
48617414 |
T |
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| Q |
224 |
tgagtggataa |
234 |
Q |
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| T |
48617415 |
tgagtggataa |
48617425 |
T |
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Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 48617205 - 48617286
Alignment:
| Q |
14 |
aaatactacaagtccccaccaccatagctgctcaccaaagtaattaggatgccgagtatagtaccacaaaccactctcaagg |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48617205 |
aaatactacaagtccccaccaccatagctgctcaccaaagtaattaggatgccgagtatagtaccacaaaccactctcaagg |
48617286 |
T |
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