View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13551_low_4 (Length: 250)
Name: NF13551_low_4
Description: NF13551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13551_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 5936091 - 5936317
Alignment:
| Q |
16 |
caaagatgagcttaagaaagctttcaaggaatttggttcgaggatgccttgttggagagcttcttgttgtcttagaaaagttgataccaatcgtgatgga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5936091 |
caaagatgagcttaagaaagctttcaaggaatttggttcgaggatgccttgttggagagcttcttgttgtcttagaaaagttgataccaatcgtgatgga |
5936190 |
T |
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| Q |
116 |
aaaatcagtagggatgaaattgattttgttgttgattatgtcttagtttggttagagtctaagaattagtagtaaagatcacaaccaagctctagtttta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5936191 |
aaaatcagtagggatgaaattgattttgttgttgattatgtcttagtttggttagagtctaagaattagtagtaaagatcacaaccaagctctagtttta |
5936290 |
T |
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| Q |
216 |
ctagcaatggacccaaaattacctatg |
242 |
Q |
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||||||||||||| ||||||||||||| |
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| T |
5936291 |
ctagcaatggacctaaaattacctatg |
5936317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 5934395 - 5934574
Alignment:
| Q |
16 |
caaagatgagcttaagaaagctttcaaggaatttggttcgaggatgccttgttggagagcttcttgttgtcttagaaaagttgataccaatcgtgatgga |
115 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| ||||| ||||||||| |
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| T |
5934395 |
caaaggtgagcttgagaaagctttcaaggaatttggttcgaggaatacttgttggagagccttttgttgtcttagaaaaattgacaccaaccgtgatgga |
5934494 |
T |
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| Q |
116 |
aaaatcagtagggatgaaattgattttgttgttgattatgtcttagtttggttagagtctaagaattagtagtaaagatc |
195 |
Q |
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|||||||| ||||| || ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |
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| T |
5934495 |
aaaatcagcagggaagagattgattctgttgttgattatgtcttagcatggttagagtccaagaattagtagtaatgatc |
5934574 |
T |
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