View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13552_low_2 (Length: 432)
Name: NF13552_low_2
Description: NF13552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13552_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 29214239 - 29213823
Alignment:
| Q |
1 |
acaatataaacaaaataatatttctgataaaagcataataaagtaataaacaaacaatttctatctacttcttttctaaaagaaaaaagtgttcannnnn |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29214239 |
acaatataaacaaaataatatt-ctgataaaagcataataaagtaataaacaaacaatttctatctacttcttttttaaaagaaaaaagtgttcattttt |
29214141 |
T |
|
| Q |
101 |
nngtctttctaatttaatcatgaatctgaatcctttttcattttaaagtgatcacaaaattgcatggttactcacttaaattattttgttgtttcgtttt |
200 |
Q |
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| T |
29214140 |
ttgtctttctaatttaatcatgaatctgagtcctttttcattttaaagtgatcacagaattgcatggttactcacttaaattattttgttgtttcacttt |
29214041 |
T |
|
| Q |
201 |
aaagtggaccaattattttttatcttcaatagaaagaatcttaaacacaacacaaaccaacattgaatctaatataaatcttgtgctatatttgaaaatg |
300 |
Q |
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| T |
29214040 |
aaagtgtaccaattattttttatcttcaatagaaagaatcttaaacacagcacaaaccaacattgaatctaatataaatcttgtgctatatttgaaaatg |
29213941 |
T |
|
| Q |
301 |
aagtactaacaaattggttcttcttaatgatgcatagcatgcagttggatatgtgagtggggatgagtattatggagcaaaagctagcataaatgtgtgg |
400 |
Q |
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| T |
29213940 |
aagtactaacaaattggttcttcttaatgatgcacagcatgcagttggatatgtgagtggggatgagtattatggagcaaaagctagcataaatgtgtgg |
29213841 |
T |
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| Q |
401 |
gtcccacaagtggaaagt |
418 |
Q |
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| T |
29213840 |
gtcccacaagtggaaagt |
29213823 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 407
Target Start/End: Complemental strand, 14496744 - 14496673
Alignment:
| Q |
336 |
agcatgcagttggatatgtgagtggggatgagtattatggagcaaaagctagcataaatgtgtgggtcccac |
407 |
Q |
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||||||||||||||||||||| ||| || | || ||||||||||| ||||||||||| ||||||| ||||| |
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| T |
14496744 |
agcatgcagttggatatgtgactggaaatcaatactatggagcaaaggctagcataaacgtgtgggccccac |
14496673 |
T |
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