View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13552_low_3 (Length: 429)
Name: NF13552_low_3
Description: NF13552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13552_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 413
Target Start/End: Complemental strand, 531250 - 530849
Alignment:
| Q |
13 |
tcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccattt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
531250 |
tcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcgttagccgcatgtccattt |
531151 |
T |
|
| Q |
113 |
gccaaaaccaattatatcaagcttctttgtattttcaaattaaaaaatggatatgcaccttcttcttttctgttgctgtctcatatcaggaagctttatt |
212 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
531150 |
gccaaaaccaattatatcaagcttctttgtatttttcaattaaaaaatggatatgcaccttcttcttttctgttgctgtctcatatcaggaagctttatt |
531051 |
T |
|
| Q |
213 |
tctggtagaatgttaatttccattagaggataaaaatgaatatctattgttcatttgctataaggggcatgatcaccgaaatggaaaaataaactactga |
312 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
531050 |
tctggtagaatgttaattttcattagaggataaaaatgaatatctattgttcattttctataaggggcatgatcaccgaaatggaaaaataaactactga |
530951 |
T |
|
| Q |
313 |
cattnnnnnnngaggatagtacataattatattttatgtggatctccatttttgtccgttaataatgtggaaataaata-tttttatctccttgttttct |
411 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
530950 |
cattaaaaaaagaggatagtacataattatattttatgtggatctccatttttgtccgttaataatgtggaaataaatattttttgtctccttgttttct |
530851 |
T |
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| Q |
412 |
at |
413 |
Q |
| |
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|| |
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|
| T |
530850 |
at |
530849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 564205 - 563998
Alignment:
| Q |
13 |
tcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccattt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
564205 |
tcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcgttagccgcatgtccattt |
564106 |
T |
|
| Q |
113 |
gccaaaaccaattatatcaagcttctttgtattttcaaattaaaaaatggatatgcaccttcttcttttctgttgctgtctcatatcaggaagctttatt |
212 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
564105 |
gccaaaaccaattatatcaagcttctttgtatttttcaattaaaaaatggatatgcaccttcttcttttctgttgctgtctcatatcaggaagctttatt |
564006 |
T |
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| Q |
213 |
tctggtag |
220 |
Q |
| |
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|||||||| |
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|
| T |
564005 |
tctggtag |
563998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 329 - 413
Target Start/End: Complemental strand, 564000 - 563915
Alignment:
| Q |
329 |
tagtacataattatattttatgtggatctccatttttgtccgttaataatgtggaaataaatat-ttttatctccttgttttctat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
564000 |
tagtacataattatattttatgtggatctccatttttgtccgttaataatgtggaaataaatattttttatctccttgttttctat |
563915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 32848034 - 32848131
Alignment:
| Q |
13 |
tcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccattt |
112 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |||| | |||||||| ||||| |||||||| |||||||||| | |||| ||||| ||||| |
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| T |
32848034 |
tcatcaattttcttgatacccattattgatcatcattt--ctctatttatgcacaatccaaacttccttgattttaggatcatgagccacatgttcattt |
32848131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 34272401 - 34272289
Alignment:
| Q |
13 |
tcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccattt |
112 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| || ||||| ||||| || |||| |||||| |||||||||| ||| | ||||||||||| |
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| T |
34272401 |
tcatcaattttcttcatacccattattatttatcatttttctatttat--gcacaatctaagcatccttgattttaggatcactagtcacatgtccattt |
34272304 |
T |
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| Q |
113 |
gccaaaaccaattat |
127 |
Q |
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|| ||||||||||| |
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| T |
34272303 |
acctaaaccaattat |
34272289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 49138212 - 49138139
Alignment:
| Q |
16 |
tcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggat |
92 |
Q |
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||||||||||||||||||||||| ||| ||||||||||| || |||| ||| ||||||||||||| ||||||||| |
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| T |
49138212 |
tcaattttcttcatacccattattgat-atcattttcctatt--tatgtacaatccaagcttcctttattttaggat |
49138139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 32471249 - 32471336
Alignment:
| Q |
40 |
gatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccatttgccaaaaccaattatat |
129 |
Q |
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||||||||||| |||| | |||||||| |||||||||||||| |||||||||| || | |||||||||||||| ||||||| |||| |
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| T |
32471249 |
gatcatcattt--ctctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatat |
32471336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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