View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13553_high_6 (Length: 202)

Name: NF13553_high_6
Description: NF13553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13553_high_6
NF13553_high_6
[»] chr3 (2 HSPs)
chr3 (20-186)||(40147013-40147179)
chr3 (25-170)||(8102782-8102927)
[»] chr4 (7 HSPs)
chr4 (28-179)||(7628933-7629084)
chr4 (25-179)||(7606548-7606702)
chr4 (25-179)||(7637379-7637533)
chr4 (29-179)||(7615562-7615712)
chr4 (130-180)||(8999254-8999304)
chr4 (20-176)||(7655785-7655941)
chr4 (29-67)||(39082796-39082834)
[»] chr6 (2 HSPs)
chr6 (20-186)||(11969237-11969403)
chr6 (24-182)||(6500795-6500954)
[»] chr8 (1 HSPs)
chr8 (29-159)||(15195805-15195935)
[»] chr7 (1 HSPs)
chr7 (29-179)||(8935758-8935908)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 40147013 - 40147179
Alignment:
Q  20 cagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcact 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40147013 cagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcact 40147112  T
Q  120 ttttacacatctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattat 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40147113 ttttacacatctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattat 40147179  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 8102927 - 8102782
Alignment:
Q  25 aggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcacttttta 124  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| | || |  ||||| ||||||||||| ||||| ||| ||||||||     
T  8102927 aggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacgggtacgaacaaaatatcttcccttcaagcactttttg 8102828  T
Q  125 cacatctttggcgctctgtgatccgttccaaacaatttgacccaca 170  Q
    |||| |||||| |||| |||||||||||| | ||||| ||||||||    
T  8102827 cacacctttggtgctcagtgatccgttccgaccaattagacccaca 8102782  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 7629084 - 7628933
Alignment:
Q  28 ttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcactttttacac 127  Q
    |||||||| || ||||||||||||||||  ||||||||||  |||  |||||  |||||||||| || ||||||||| || || ||| | ||| | || |    
T  7629084 ttattccactttacaaaggagaaaatcgtgcaactgaaatcaaaaatcaacaaagagattggtaacatcaaaatatcttctctacaagcgcttctaactc 7628985  T
Q  128 atctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagt 179  Q
    || ||||| ||| ||||| ||||| |||||||||||||||||| ||||||||    
T  7628984 atgtttggtgctatgtgacccgtttcaaacaatttgacccacaagaagaagt 7628933  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 7606702 - 7606548
Alignment:
Q  25 aggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcacttttta 124  Q
    |||||||| |||||||||||||||||||||   |||||||||| ||||  |||    ||| ||||||||| ||||||| | || || ||| | ||||| |    
T  7606702 aggttatttcatttcacaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaa 7606603  T
Q  125 cacatctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagt 179  Q
    | || |||||| |||||||  ||||||||||||||||||||| ||| ||||||||    
T  7606602 ctcacctttggtgctctgtcgtccgttccaaacaatttgacctacaagaagaagt 7606548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 7637533 - 7637379
Alignment:
Q  25 aggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcacttttta 124  Q
    |||||||| |||||||||||||||||||||   ||| |||||| ||||  ||||   ||||| || |||| ||||||||| || || ||| ||||||| |    
T  7637533 aggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacgaagagatcggcaccaccaaaatatcttctctacaagcacttttaa 7637434  T
Q  125 cacatctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagt 179  Q
    | ||  ||||| ||| ||||| ||||| |||||||||||||||||| ||||||||    
T  7637433 ctcacgtttggtgctatgtgacccgtttcaaacaatttgacccacaagaagaagt 7637379  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 179
Target Start/End: Complemental strand, 7615712 - 7615562
Alignment:
Q  29 tattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcactttttacaca 128  Q
    |||| ||||||||||| |||||||| |  ||||| |||| ||||  |||    ||||||||||||| ||||||||| || || |||   ||||| || ||    
T  7615712 tatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagtgcttttaactca 7615613  T
Q  129 tctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagt 179  Q
     |||||| |||||||||| ||||||| | ||||||||||||| ||||||||    
T  7615612 cctttggtgctctgtgatgcgttccataaaatttgacccacaagaagaagt 7615562  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 8999304 - 8999254
Alignment:
Q  130 ctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtt 180  Q
    ||||||||||||||||||||||| |||||| |||||| ||| |||||||||    
T  8999304 ctttggcgctctgtgatccgttcaaaacaacttgacctacaagaagaagtt 8999254  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 7655785 - 7655941
Alignment:
Q  20 cagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcact 119  Q
    |||||||| |||| || || |||||| ||||||||   |||||||||| ||||| |||    ||||||| |||||| |||||||| || || ||| | ||    
T  7655785 cagagaggatatttcactttacaaagaagaaaatcatgcaactgaaatcgaaagtcaatgcagagattgataccaaaaaaatatcttctctacaagcgct 7655884  T
Q  120 ttttacacatctttggcgctctgtgatccgttccaaacaatttgacccacacgaaga 176  Q
    ||| || ||||||||| | || ||||| |||||||||||  |||| ||||| |||||    
T  7655885 tttaactcatctttggtgttcagtgattcgttccaaacatcttgatccacaagaaga 7655941  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 39082834 - 39082796
Alignment:
Q  29 tattccatttcacaaaggagaaaatcgctcaactgaaat 67  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  39082834 tattccatttcacaaaggagaaaatcgcggaactgaaat 39082796  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 11969403 - 11969237
Alignment:
Q  20 cagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcact 119  Q
    |||||||||||||||||||||||||| |||||||    ||||||||||  ||||| ||||  |||   || || ||||| ||||| ||| | ||| | ||    
T  11969403 cagagaggttattccatttcacaaagcagaaaattttgcaactgaaatcaaaagcaaacacagaggccggaacaaacaacatatcttccttacaagcgct 11969304  T
Q  120 ttttacacatctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagtttattat 186  Q
    ||| || || || |||||||||||| |||| || || |||||||||||||| ||||||||| |||||    
T  11969303 tttcactcacctctggcgctctgtggtccgctcaaatcaatttgacccacaagaagaagttcattat 11969237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 6500954 - 6500795
Alignment:
Q  24 gaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcacttttt 123  Q
    ||||||||||||||| |||||||| ||||||    || ||||||  ||||||||  | ||| ||||||  ||||||||||||||| | ||| | |||||     
T  6500954 gaggttattccattttacaaaggaaaaaatcttgaaattgaaatataaagccaagttagagtttggtatgaacaaaatatcatccttacaagctctttta 6500855  T
Q  124 acacatctttggcgctctgtgatccgttccaaacaatttgaccca-cacgaagaagttta 182  Q
    || ||  ||||||| |||||||||| ||||||| || |||||||| || |||||||||||    
T  6500854 actcacatttggcgttctgtgatccattccaaaaaacttgacccaccaagaagaagttta 6500795  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 15195805 - 15195935
Alignment:
Q  29 tattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcactttttacaca 128  Q
    |||||||||| ||||||||||| |||||   ||| ||||| ||||| || || ||   ||| |||||||||||||| ||| | ||| | ||||  || ||    
T  15195805 tattccattttacaaaggagaatatcgcgagactcaaattaaaagctaatatagaagctggcaccaacaaaatatcttccatgcaagcgctttgcaccca 15195904  T
Q  129 tctttggcgctctgtgatccgttccaaacaa 159  Q
     ||||||||||| ||||||||||||||||||    
T  15195905 cctttggcgctcagtgatccgttccaaacaa 15195935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 8935758 - 8935908
Alignment:
Q  29 tattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaaaatatcatccctccaatcactttttacaca 128  Q
    |||| ||||||||||| ||||||||||  || |||||||| |||  |||    ||||||||||||| ||||||||| || || ||| | | ||| || ||    
T  8935758 tatttcatttcacaaaagagaaaatcgtacagctgaaattaaaaatcaatgaagagattggtaccatcaaaatatcttctctacaagcgcctttaactca 8935857  T
Q  129 tctttggcgctctgtgatccgttccaaacaatttgacccacacgaagaagt 179  Q
     |||||| ||| ||||||  |||||||| || |||||||||| ||||||||    
T  8935858 cctttggtgctgtgtgatgtgttccaaaaaaattgacccacaagaagaagt 8935908  T

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