View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13553_low_2 (Length: 237)
Name: NF13553_low_2
Description: NF13553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13553_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 3877034 - 3877158
Alignment:
| Q |
10 |
attcttcttgctcaatatgatgtaatatctgaagtggaagagaatgaagaagaattagacacagaaaacatggctaacaataagctagtttgctattatg |
109 |
Q |
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| T |
3877034 |
attcttcctgctcaatatgatgtaatatctgaagtggaagagaatgaagaagaattcgacacagaaaacatggctaaccataagtcagttttctattacg |
3877133 |
T |
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| Q |
110 |
taatgaataatggttttgtggagga |
134 |
Q |
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| T |
3877134 |
taatgaataatggttgggtggagga |
3877158 |
T |
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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 25558371 - 25558545
Alignment:
| Q |
4 |
gtgttgattcttcttgctcaatatgatgtaatatctgaagtggaagagaatgaagaagaattagacacagaaaacatggctaacaataagctagtttgct |
103 |
Q |
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| T |
25558371 |
gtgttgattcttcctgctaaatatgatgtaatatctgaagtagaagatactaaagaacattttgacgcagaaaccatggctaaccataagctagttgtct |
25558470 |
T |
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| Q |
104 |
attatgtaatgaataatggttttgtggaggatcaacaagccatgtttgagaaactaaatggcaccatgcaaagcc |
178 |
Q |
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| T |
25558471 |
attatgtaatgaataatggttgtgctgaggagcaacaagcctagatcgagaaacaaaatggcaacatgaaaagcc |
25558545 |
T |
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