View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13554_low_1 (Length: 959)
Name: NF13554_low_1
Description: NF13554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13554_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 716; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 107 - 898
Target Start/End: Original strand, 34352896 - 34353686
Alignment:
| Q |
107 |
aactaatgctgtcacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgata |
206 |
Q |
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| T |
34352896 |
aactaatgctgtcacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgata |
34352995 |
T |
|
| Q |
207 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtaccatgtcaacagaaaaa-tggatattcatcgctgaattgcttggatattctcaagcacag |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34352996 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtaccatgtcaacagaaaaaatggatattcatcgctgaattgcttggatattctcaagcacag |
34353095 |
T |
|
| Q |
306 |
acaaaataagcaaa-----acaaaacaaaaatagtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcattgctagtttgggattcgac |
400 |
Q |
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| T |
34353096 |
acaaaataagcaaaacaaaacaaaacaaaaatagtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcgttgctagtttgggattcgac |
34353195 |
T |
|
| Q |
401 |
agagacaatggaagacgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaagacaaagacttgactaaggaggaagaa |
500 |
Q |
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| T |
34353196 |
agagacaatggaagacgaaaagatcctggtggagctgaaagagtggctgatacggcaggcacgaaaagcacaagacaaagacttcactaaggaggaagaa |
34353295 |
T |
|
| Q |
501 |
accattgttgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaatacacaagatcgtggttgattgtgtttgt |
600 |
Q |
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| T |
34353296 |
accattgtcgcttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaatacacaagatcgtggttgattgtgtttgt |
34353395 |
T |
|
| Q |
601 |
ttattttaatattacaccatgattgaaatatagtaaaagatagattaaaataataattagcactgaaacagtgaaatataatattttccatttgaatacc |
700 |
Q |
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| T |
34353396 |
ttattttaatattacaccatgattgaaatatagtaaaagatagattaaaataataattagcactgaaacagtgaaatataat-------atttgaatacc |
34353488 |
T |
|
| Q |
701 |
tccatgattgaaatattttttataaccacttgtctgaccctgtctgcactcacctaaccgccaactccaattctgcaaaccactgccattacttagcaag |
800 |
Q |
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| T |
34353489 |
tccatgattgaaatattttttataaccacttgtctgaccctgtcagcactcacctaaccgccaactccaattctgcaaaccaccgccattacttagcaag |
34353588 |
T |
|
| Q |
801 |
tcatgagcctttgaaggataattcccttcaagttaagacttatgagagatataaagaactaagatgtaaagtctagatataatttaatgccttgagtg |
898 |
Q |
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| T |
34353589 |
tcatgagcctttgaaggataattcccttcaagttaagacttatgagagatataaagaactaagatgtaaattctagatataatttaatgccttgagtg |
34353686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 119 - 795
Target Start/End: Original strand, 34358547 - 34359207
Alignment:
| Q |
119 |
cacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaa |
218 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34358547 |
cacacacatctacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaa |
34358646 |
T |
|
| Q |
219 |
accattggcgtttttcctatgagctgtaccatgtcaacag----aaaaatggatattcatcgctgaattgcttggatattctcaagcacagacaaaataa |
314 |
Q |
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| T |
34358647 |
accattggcgtttttcctatgagttgtgccatgcaagcagcaaaaaaaatggagattcatcaccgaattgcatg------ct---------acaaaataa |
34358731 |
T |
|
| Q |
315 |
gcaaaa-caaaacaaaaatagtgt--gaaaccgacctgtgtaatatcatcggcaatattgagatcatcattgctagtttgggattcgacagagacaatgg |
411 |
Q |
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| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | ||| ||| |
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| T |
34358732 |
gaaaaaacaaaacaaaaatagtgtgtgaaaccgacctgtgtaatatcatcggcaatattgagaacatcgttgctagtttgggattcgacataaacagtgg |
34358831 |
T |
|
| Q |
412 |
aagacgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaagacaaagacttgactaaggaggaagaaaccattgttgc |
511 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
34358832 |
aagacgaaaagatcctggtggagctgaaacagtggctgatacggccagcacgcaaagcacaagtcaaagacttgactaaggaggaagaagccattgttgt |
34358931 |
T |
|
| Q |
512 |
ttgttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaatacacaagatcgtggttgattgtgtttgtttattttaata |
611 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
34358932 |
ttgttgagaattctcagatcacataacattgttaaaagaagataaggtacacgcacgaaatgcacaagatcatggttgattgtgtttgtttattttaata |
34359031 |
T |
|
| Q |
612 |
ttacaccatgattgaaatatagtaaaagatagattaaaataataattagcactgaaacagtgaaatataatattttccatttgaatacctccatgattga |
711 |
Q |
| |
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|||| ||||||||| | || ||||||||||||||||||||| |||| |||||| | ||||||||||||| |||||||| ||||||||||||| |
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| T |
34359032 |
ttactccatgattgcagtacagtaaaagatagattaaaatatctattaacactgagatagtgaaatataat-------atttgaatccctccatgattga |
34359124 |
T |
|
| Q |
712 |
aatattttttataaccacttgtctgaccctgtctgcactcacctaaccgccaactccaattctgcaaaccactgccattactta |
795 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||| ||||||||| ||||||| |||||| |||||||| |||| |||||| |
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| T |
34359125 |
aatattttttataaccacttttctggccctgtctgctctcacctaa-tgccaacttgaattctacaaaccaccgccagtactta |
34359207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 34369011 - 34369126
Alignment:
| Q |
129 |
tacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaaaccattggcg |
228 |
Q |
| |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||| | ||| || ||||| ||||||||||| | |
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| T |
34369011 |
tacctgtctttgacactacaacaaggctccataatctcaagcttagcagcaatattagcaacggaaccctttgcgatgctattcagataaaccattggtg |
34369110 |
T |
|
| Q |
229 |
tttttcctatgagctg |
244 |
Q |
| |
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|||||||||||||||| |
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|
| T |
34369111 |
tttttcctatgagctg |
34369126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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