View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13554_low_2 (Length: 541)
Name: NF13554_low_2
Description: NF13554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13554_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 225 - 532
Target Start/End: Complemental strand, 53056929 - 53056622
Alignment:
| Q |
225 |
gcttaattaagttgtttaaccttacatgattaatgatggttttaattattgtatttaggtatgggaaccaaaattgaatgttccataaatcttgtagcaa |
324 |
Q |
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| T |
53056929 |
gcttaattaagttgtttaaccttacatgattaatgatggttttaattattgtatttaggtatgggaaccaaaattgaatgttccataaatcttgtagcaa |
53056830 |
T |
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| Q |
325 |
ccttggtaaagagcaataagttagctgtgggagcattattatcagaacaaagggaggctgaccaataaccatcataggactagaatcaataaattgccag |
424 |
Q |
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| T |
53056829 |
ccttggtaaagagcaataagttagctgtgggagcattattatcagaacaaagggaggctgaccaataaccatcataggactagaatcaataaattgcaag |
53056730 |
T |
|
| Q |
425 |
gtcccatcatggataggaggatgcttgacagaaacaacatagaatccatcaaaaagacaatgcagatgcatgaggacatcttcaaacaccaggtatcctg |
524 |
Q |
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| T |
53056729 |
gtcccatcatggataggaggatgcttgacagaaacaacatagaatccatcaaaaagacaatgcagatgcatgaggacatcttcaaacaccaggtatcctg |
53056630 |
T |
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| Q |
525 |
atgatgtc |
532 |
Q |
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| |||||| |
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| T |
53056629 |
aagatgtc |
53056622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 48 - 166
Target Start/End: Complemental strand, 53057106 - 53056988
Alignment:
| Q |
48 |
aaactgaatgttgtccccatcttcacattgtagcttgagagatcatgacctatctaaagactattttcaactaattttcataagttcttcaggatagcct |
147 |
Q |
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| T |
53057106 |
aaactgaatgttgtccccatcttcacattgtagcttgagagatcatgacctatctatagactattttcaactaattttcataagttcttcaggatagcct |
53057007 |
T |
|
| Q |
148 |
ataaaacctgcatgaaaac |
166 |
Q |
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| T |
53057006 |
ataaaacctgcatgaaaac |
53056988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 44320004 - 44319967
Alignment:
| Q |
108 |
ctattttcaactaattttcataagttcttcaggatagc |
145 |
Q |
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| T |
44320004 |
ctattttcaactaattttcataagttctctaggatagc |
44319967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 448 - 521
Target Start/End: Original strand, 15909366 - 15909439
Alignment:
| Q |
448 |
cttgacagaaacaacatagaatccatcaaaaagacaatgcagatgcatgaggacatcttcaaacaccaggtatc |
521 |
Q |
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| T |
15909366 |
cttgacagaaacaacatggaatccattagaaagacaatgcagatacaagaggacatcttcaaaaaccaggtatc |
15909439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 9602678 - 9602712
Alignment:
| Q |
111 |
ttttcaactaattttcataagttcttcaggatagc |
145 |
Q |
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| T |
9602678 |
ttttcaacttattttcataagttcttcaggatagc |
9602712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 52440680 - 52440712
Alignment:
| Q |
111 |
ttttcaactaattttcataagttcttcaggata |
143 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
52440680 |
ttttcaactaattttcataagttcttcaagata |
52440712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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