View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13554_low_3 (Length: 421)
Name: NF13554_low_3
Description: NF13554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13554_low_3 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 25996623 - 25996231
Alignment:
| Q |
16 |
atcaagatttgcatataaaacttcctcaagaaaattttgagttcca----aaacttccatcttctacctaattaaatcacatcaaacacttatacaaccc |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25996623 |
atcaagatttgcatataaaacttcctcaagaaaatttcgagttccatacaaaacttccatcttctacctaattaaatcacatcaaacacttatacaaccc |
25996524 |
T |
|
| Q |
112 |
tagcacgtaaacaaaactcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattatcaagc |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25996523 |
tagcacgtaaacaaaactcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcctttttcatgcaaattatcaagc |
25996424 |
T |
|
| Q |
212 |
aagtgatatgcacaaaatttaaagaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatcaaa |
311 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25996423 |
aagtgatatgcacaaaatttatagaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatcaaa |
25996324 |
T |
|
| Q |
312 |
caagtgatgtgcataaatcttaatcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacacacgtacatac |
404 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25996323 |
caagtgatgtgcataaaacttaatcttttgttttgctccaaaatgaaacaaacttagaacaataaataattaaatacaaacacacgtacatac |
25996231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 26096005 - 26095712
Alignment:
| Q |
16 |
atcaagatttgcatataaaacttcctcaagaaaattttgagttcca----aaacttccatcttctacctaattaaatcacatcaaacacttatacaaccc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26096005 |
atcaagatttgcatataaaacttcctcaagaaaatttcaagttccatacaaaacttccatcttctacctaattaaatcacatcaaacacgtatacaaccc |
26095906 |
T |
|
| Q |
112 |
tagcacgtaaacaaaactcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattatcaagc |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26095905 |
tagcacgtaaacaaaactca--gaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcctttttcatgcaaattatcaagc |
26095808 |
T |
|
| Q |
212 |
aagtgatatgcacaaaatttaaagaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattat |
307 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26095807 |
aagtgatatgcacaaaatttatacaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattat |
26095712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 26095712 - 26095653
Alignment:
| Q |
345 |
tgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacacacgtacatac |
404 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26095712 |
tgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacaaacgtacatac |
26095653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 26095886 - 26095796
Alignment:
| Q |
234 |
agaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatcaaacaagtgatgtgca |
324 |
Q |
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|||||||||| |||| ||| |||||| ||||||||||| ||||||||||| |||| ||||||| ||||||||||| |||||||| |||| |
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| T |
26095886 |
agaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcctttttcatgcaaattatcaagcaagtgatatgca |
26095796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 26095 - 25721
Alignment:
| Q |
16 |
atcaagatttgcatataaaacttcctcaagaaaattttgagttcca----aaacttccatcttctacctaattaaatcacatcaaacacttatacaaccc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26095 |
atcaagatttgcatataaaacttcctcaagaaaatttcgagttccatacaaaacttccatcttctacctaattaaatcacatcaaacacttatacaaccc |
25996 |
T |
|
| Q |
112 |
tagcacgtaaacaaaactcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattatcaagc |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25995 |
tagcacgtaaacaaaactcttagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcctttttcatgcaaattatcaagc |
25896 |
T |
|
| Q |
212 |
aagtgatatgcacaaaatttaaagaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatcaaa |
311 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
25895 |
aagtgatatgcacaaaatttatagaaatagaaacatttacaattaaaaccaaagtaattgttaatgattcataacatctcttttcattcaaattatcaaa |
25796 |
T |
|
| Q |
312 |
caagtgatgtgcataaatcttaatcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacacacgtacatac |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25795 |
------------------cttaatcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacacacgtacatac |
25721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 234 - 389
Target Start/End: Complemental strand, 29901242 - 29901088
Alignment:
| Q |
234 |
agaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatcaaacaagtgatgtgcataaatctta |
333 |
Q |
| |
|
|||||||||| |||| ||| ||||| ||| ||||||| |||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||| | || |
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|
| T |
29901242 |
agaaatagaagcattaacagttaaac-caaggtaattgttaatgactcattgcatctgttttcatacaaattatcaaacaagtgatgtgcataaaacata |
29901144 |
T |
|
| Q |
334 |
atcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaataca |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
29901143 |
atcttttgttttgctccaaaatgaaacaaacttagaaccaaaaataattaaataca |
29901088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 29901248 - 29901148
Alignment:
| Q |
127 |
actcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattatcaagcaagtgatatgcacaa |
226 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| |||| || |
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|
| T |
29901248 |
actcatagaaatagaagcattaacagttaaa-ccaaggtaattgttaatgactcattgcatctgttttcatacaaattatcaaacaagtgatgtgcataa |
29901150 |
T |
|
| Q |
227 |
aa |
228 |
Q |
| |
|
|| |
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|
| T |
29901149 |
aa |
29901148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 234 - 389
Target Start/End: Original strand, 14713696 - 14713850
Alignment:
| Q |
234 |
agaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatcaaacaagtgatgtgcataaatctta |
333 |
Q |
| |
|
|||||||||| |||| ||| ||||| ||| ||||||| |||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||| | || |
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|
| T |
14713696 |
agaaatagaagcattaacagttaaac-caaggtaattgttaatgactcattgcatctgttttcatccaaattatcaaacaagtgatgtgcataaaacata |
14713794 |
T |
|
| Q |
334 |
atcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaataca |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14713795 |
atcttttgttttgctccaaaatgaaacaaacttagaaccaaaaataattaaataca |
14713850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 14713690 - 14713790
Alignment:
| Q |
127 |
actcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattatcaagcaagtgatatgcacaa |
226 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| |||| || |
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|
| T |
14713690 |
actcatagaaatagaagcattaacagttaaa-ccaaggtaattgttaatgactcattgcatctgttttcatccaaattatcaaacaagtgatgtgcataa |
14713788 |
T |
|
| Q |
227 |
aa |
228 |
Q |
| |
|
|| |
|
|
| T |
14713789 |
aa |
14713790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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