View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13554_low_6 (Length: 235)
Name: NF13554_low_6
Description: NF13554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13554_low_6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 6567073 - 6566857
Alignment:
| Q |
19 |
attggagaccatctgttcctcagtcaaaaacgaacaatcagatcctttcaacatattcaacaaatgcacagtactgatgtcaataaagnnnnnnnctaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6567073 |
attggagaccatctgttcctcagtcaaaaacgaacaatcagatcctttcaacatattcaacaaatgcacagtactgatgtcaataaagaaaaaaactaga |
6566974 |
T |
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| Q |
119 |
cttgtgtaaatcctgctaaccttaaccccggcctctgcagtgaatgggctatcaaaatcatgcagcaagtttatgtttccttttgttcctaagcttgcaa |
218 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
6566973 |
cttgtgtaaatcctgctaaccttaaccccggactctgcagtgaatgggctatcaaaatcatgcagcaaatttatgtttccttttgttccgaagcttgcaa |
6566874 |
T |
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| Q |
219 |
cggccaagctccccatt |
235 |
Q |
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| T |
6566873 |
ctgccaagctccccatt |
6566857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 6652526 - 6652310
Alignment:
| Q |
19 |
attggagaccatctgttcctcagtcaaaaacgaacaatcagatcctttcaacatattcaacaaatgcacagtactgatgtcaataaagnnnnnnnctaga |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |||||| ||||| |
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| T |
6652526 |
attggagaccatctgttcctcaatcaaaaacaaacaatcagatcctttcaacatattcaacaaatgcgcaatactgatgtccataaagaaaaaaactaga |
6652427 |
T |
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| Q |
119 |
cttgtgtaaatcctgctaaccttaaccccggcctctgcagtgaatgggctatcaaaatcatgcagcaagtttatgtttccttttgttcctaagcttgcaa |
218 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
6652426 |
cttgtgtaaatcctgctaaccttaactccggcttctgcagtgaatgggctatcaaaatcatgcagcaaatttatgtttccttttgttccgaagcttgcaa |
6652327 |
T |
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| Q |
219 |
cggccaagctccccatt |
235 |
Q |
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||||||||||||||||| |
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| T |
6652326 |
cggccaagctccccatt |
6652310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 6732926 - 6732710
Alignment:
| Q |
19 |
attggagaccatctgttcctcagtcaaaaacgaacaatcagatcctttcaacatattcaacaaatgcacagtactgatgtcaataaagnnnnnnnctaga |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |||||| ||||| |
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| T |
6732926 |
attggagaccatctgttcctcaatcaaaaacaaacaatcagatcctttcaacatattcaacaaatgcgcaatactgatgtccataaagaaaaaaactaga |
6732827 |
T |
|
| Q |
119 |
cttgtgtaaatcctgctaaccttaaccccggcctctgcagtgaatgggctatcaaaatcatgcagcaagtttatgtttccttttgttcctaagcttgcaa |
218 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
6732826 |
cttgtgtaaatcctgctaaccttaacaccggcttctgcagtgaatgggctatcaaaatcatgcagcaaatttatgtttccttttgttccgaagcttgcaa |
6732727 |
T |
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| Q |
219 |
cggccaagctccccatt |
235 |
Q |
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| ||||||||||||||| |
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| T |
6732726 |
cagccaagctccccatt |
6732710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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