View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13555_high_14 (Length: 350)
Name: NF13555_high_14
Description: NF13555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13555_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 229 - 332
Target Start/End: Complemental strand, 2928593 - 2928490
Alignment:
| Q |
229 |
caactaacttatactatgaaaaacgcaatagaacagctccaatacacaaatctaagaaactgaaaaactatcgaaacagtacaccagagattgacagact |
328 |
Q |
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| T |
2928593 |
caactgactgatactaagaaaaacaaaatagaacaactccaatacacaaatctaagaaactgaaaaaccgcccaaacagtacaccagagattgacagact |
2928494 |
T |
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| Q |
329 |
agtt |
332 |
Q |
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|||| |
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| T |
2928493 |
agtt |
2928490 |
T |
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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 3002717 - 3002773
Alignment:
| Q |
231 |
actaacttatactatgaaaaacgcaatagaacagctccaatacacaaatctaagaaa |
287 |
Q |
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| T |
3002717 |
actaactgatactaagaaaaacgcaatagaacagctccaatacacaaatataagaaa |
3002773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 37200252 - 37200292
Alignment:
| Q |
254 |
caatagaacagctccaatacacaaatctaagaaactgaaaa |
294 |
Q |
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||||||| |||| |||||||||||| ||||||||||||||| |
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| T |
37200252 |
caatagagcagccccaatacacaaaactaagaaactgaaaa |
37200292 |
T |
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