View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13555_high_17 (Length: 259)
Name: NF13555_high_17
Description: NF13555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13555_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 10164533 - 10164770
Alignment:
| Q |
14 |
agacatgtgtggacatcggacatgccattgatcagaagtgtcggtgctaca-aggatcattcaccgttgatattttcgaaaaagatcaaaacattgctaa |
112 |
Q |
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| T |
10164533 |
agacatgcgtggacaccggacatgccattgattagaagtgtcggtgctatagaggatcattcacttgtgatattttcgaaaaagatcaaaatattattaa |
10164632 |
T |
|
| Q |
113 |
cagaataca--gaggggtaatctagtaacctatacacaaaaagagctctaagaaccgccatatacaaactaagccatcagtttaatactctcagattact |
210 |
Q |
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|| | |||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10164633 |
caaagtacacagaggggtaatctaaaaatctatacacaaaaagagctctaagaaccgccatatacaaactaagccatcagtttaatactctcagattact |
10164732 |
T |
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| Q |
211 |
acatcaatcataaagaaaacaaggacatagatttgtct |
248 |
Q |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
10164733 |
acatcaatcataaagaaaacaaggatatagatttgtct |
10164770 |
T |
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