View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13555_high_2 (Length: 646)
Name: NF13555_high_2
Description: NF13555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13555_high_2 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 17 - 646
Target Start/End: Complemental strand, 34146161 - 34145532
Alignment:
| Q |
17 |
ctgtgaagctttttgacaaaactaagggtgaaagaaattgtgtaacgtggaattcaatgatgtcgggttacattcataatggtcagcacaacgaggcatt |
116 |
Q |
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| T |
34146161 |
ctgtgaagctttttgacaaaactaagggtgaaagaaattgtgtaacgtggaattcaatgatgtcgggttacattcataatggtgagcacagcgaggcatt |
34146062 |
T |
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| Q |
117 |
gaaattatacgtgaccatgcgtagatttttagttgagtatagcagatcaacattctctgttctatttcgtgcttgtgcatacctctgttcttttcaacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34146061 |
gaaattatacgtgaccatgcgtagatttttagttgagtatagcagatcaacattctctgttctatttcgtgcttgtgcatacctctgttcttttcaacaa |
34145962 |
T |
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| Q |
217 |
ggacagttgcttcatgcacacttagccaaaacgccataccaggaaaatgtttacgttggaactgctcttgtggatttctattccaaatgtggtcacttgg |
316 |
Q |
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| T |
34145961 |
ggacagttgcttcatgcacacttagccaaaacgccataccaggaaaatgtttacgttggaactgctcttgtggatttctattccaaatgtggtcacttgg |
34145862 |
T |
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| Q |
317 |
ccgatgctcaaaggtcattcaccagcatcttttcacccaatgtagcagcatggacagctcttataaatggttatgcataccatggatgcggatctgaggc |
416 |
Q |
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| T |
34145861 |
ccgatgctcaaaggtcattcaccagcatcttttcacccaatgtagcagcatggacagctcttataaatggttatgcataccatggatgcggatctgaggc |
34145762 |
T |
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| Q |
417 |
gatttcacgcttccgctcaatgttagatcaaggtgttgttccaaatgctgctacttttgtagctgttctttccgcctgtagccatgctggcctagttgac |
516 |
Q |
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| T |
34145761 |
gatttcacgcttccgctcaatgttagatcaaggtgttgttccaaatgctgctacttttgtagctgttctttccgcctgtagccatgctggcctagttgac |
34145662 |
T |
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| Q |
517 |
gaaggtttgaaattttttcactcaatgcagataaactacagaataaccccaacaatagagcattacacatgcgtggtggatcttcttggtcggtcaggcc |
616 |
Q |
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| T |
34145661 |
gaaggtttgaaattttttcactcaatgcagataaactacagaataaccccaacaatagagcattacacatgcgtggtggatcttcttggtcggtcaggcc |
34145562 |
T |
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| Q |
617 |
gtgtgaaagaagcagaagagtttatcatac |
646 |
Q |
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| T |
34145561 |
gtgtgaaagaagcagaagagtttatcatac |
34145532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 17 - 646
Target Start/End: Original strand, 29009235 - 29009861
Alignment:
| Q |
17 |
ctgtgaagctttttgacaaaactaagggtgaaagaaattgtgtaacgtggaattcaatgatgtcgggttacattcataatggtcagcacaacgaggcatt |
116 |
Q |
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| T |
29009235 |
ctgtgaagctttttgacaaaactaagggtgagagaaattgtgtatcgtggaattcaatgatgtcgggttacattcataatggtcagcacagtgaggcatt |
29009334 |
T |
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| Q |
117 |
gaaattatacgtgaccatgcgtagatttttagttgagtatagcagatcaacattctctgttctatttcgtgcttgtgcatacctctgttcttttcaacaa |
216 |
Q |
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| T |
29009335 |
gaaattatatgtgactatgcgcagatattcagttgagtatagaagatcaacattctctgtcctatctggtggttgtgcatacctctgttcttttcaacaa |
29009434 |
T |
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| Q |
217 |
ggacagttgcttcatgcacacttagccaaaacgccataccaggaaaatgtttacgttggaactgctcttgtggatttctattccaaatgtggtcacttgg |
316 |
Q |
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| T |
29009435 |
ggacagttgcttcatgcacacttagccaaaacgccataccaggaaaatgtttacgttggaactgctcttgtggatttctattccaaatgtggtcatttgg |
29009534 |
T |
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| Q |
317 |
ccgatgctcaaaggtcattcaccagcatcttttcacccaatgtagcagca---tggacagctcttataaatggttatgcataccatggatgcggatctga |
413 |
Q |
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| T |
29009535 |
ctgatgctcaaaggtcattcaccagcatcttttcacccaatgtagcagcagcatggacagctcttataaatggttatgcataccatggatgtg-atctga |
29009633 |
T |
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| Q |
414 |
ggcgatttcacgcttccgctcaatgttagat-----caaggtgttgttccaaatgctgctacttttgtagctgttctttccgcctgtagccatgctggcc |
508 |
Q |
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| T |
29009634 |
ggcgatttcacgcttccgctcaatgttagattagatcaacacgttgttccaaatgctgctacttttgtagctgttctttctgcctgtag----------c |
29009723 |
T |
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| Q |
509 |
tagttgacgaaggtttgaaattttttcactcaatgcagataaactacagaataaccccaacaatagagcattacacatgcgtggtggatcttcttggtcg |
608 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29009724 |
tagttgacgaaggtttggaattttttcactcaatgcagataaattacagagttaccccaacaatagagcattacacatgggtggtggatcttcttggtcg |
29009823 |
T |
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| Q |
609 |
gtcaggccgtgtgaaagaagcagaagagtttatcatac |
646 |
Q |
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| T |
29009824 |
gtcaggccgtgtgaaagaagcagaagagtttatcatac |
29009861 |
T |
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