View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13555_high_21 (Length: 238)
Name: NF13555_high_21
Description: NF13555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13555_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13147473 - 13147248
Alignment:
| Q |
1 |
ccacaagattaacactagactttccatcttcggttaaaccnnnnnnnnnn----aaattataaatattcacatcaacgagtactctgacgctatctttaa |
96 |
Q |
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| T |
13147473 |
ccacaagattaacactagactttccatcttcggttaaaccttttttttttttttaaattataaatattcacatcaacgagtactctggcgctatatttaa |
13147374 |
T |
|
| Q |
97 |
caacataagattggtctcaatgaatattttgtttttgacaggatttatcatccttataaattgatgtac-tttcttgaaaaggaattgcttcatcaacat |
195 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
13147373 |
caacataagattggtctcaatcaatattatgtttttgacaggatttatcatccttataaatttatgtacttttcttgaaaaggaattgcttcatcaacat |
13147274 |
T |
|
| Q |
196 |
caacattttcctgctacatttcccat |
221 |
Q |
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|||||||||||||||||||||||||| |
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| T |
13147273 |
caacattttcctgctacatttcccat |
13147248 |
T |
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