View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13555_high_3 (Length: 595)

Name: NF13555_high_3
Description: NF13555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13555_high_3
NF13555_high_3
[»] chr6 (7 HSPs)
chr6 (180-587)||(24882858-24883264)
chr6 (16-124)||(24883264-24883372)
chr6 (162-257)||(32590713-32590808)
chr6 (162-257)||(32601184-32601279)
chr6 (385-479)||(32601544-32601638)
chr6 (386-479)||(32591076-32591169)
chr6 (276-321)||(32601397-32601442)
[»] chr1 (9 HSPs)
chr1 (254-321)||(34594429-34594496)
chr1 (185-257)||(34578555-34578627)
chr1 (185-257)||(34594259-34594331)
chr1 (381-424)||(34594626-34594669)
chr1 (278-320)||(34578745-34578787)
chr1 (386-479)||(34578890-34578983)
chr1 (276-321)||(35124433-35124478)
chr1 (386-479)||(35124578-35124671)
chr1 (185-257)||(35124248-35124320)


Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 180 - 587
Target Start/End: Complemental strand, 24883264 - 24882858
Alignment:
Q  180 atttgactcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtaccgttctttgggggttacatcatt 279  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24883264 atttgactcaccattcacacaaagagtagaagattggccttccagattgtactaaagcttcacccattcgtgggtacctttctttgggggttacatcatt 24883165  T
Q  280 attctcacaattatcatacttcaagtagtcaattccctaaagcaacaaagaaaataagtttatatataaatgcaaaatggctttcaaatgaaatgcatat 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24883164 attctcacaattatcatacttcaagtagtcaattccctaaagcaacaaagaaaataagtttatatataaatgcaaaatggctttcaaatgaaatgcatat 24883065  T
Q  380 atatattacccatgaagcaaatgtttttgcatcttgttcttcatgccctaattatcctggcattcttttactgcatgtttgatttctgcagagaaattgt 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24883064 atatattacccatgaagcaaatgtttttgcatcttgttcttcatgccctaatgatcctggcattcttttactgcatgtttgatttctgcagagaaattgt 24882965  T
Q  480 tagatagatgtgaaaattgttgatcaatcacaaatattaaaaatcaaagttttagtttaacatgtgataccctgcatcagaatagatccctagctttaga 579  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24882964 tacatagatgtgaaaattgttgatcaatcacaaatatt-aaaatcaaagttttagtttaacatgtgataccctgcatcagaatagatccctagctttaga 24882866  T
Q  580 cctttgct 587  Q
    ||||||||    
T  24882865 cctttgct 24882858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 24883372 - 24883264
Alignment:
Q  16 catattgatgggtcttctgctcccctatatttgagaatgcaattaatcatgaaaaatatgcatgctaattatagttgcttctagcattataaattgttct 115  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24883372 catattgacgggtcttctgctcccctatatttgagaatgcaattaatcatgaaaaatatgcatgctaattatagtttcttctagcattataaattgttct 24883273  T
Q  116 tgagtgata 124  Q
    |||||||||    
T  24883272 tgagtgata 24883264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 32590713 - 32590808
Alignment:
Q  162 tgagaaacatgatcaccaatttgactcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacc 257  Q
    |||||||||| ||||| ||||  |||||||||||||||| |||| ||||||||| ||||||||||| || ||| ||||||| |||| |||| ||||    
T  32590713 tgagaaacattatcactaattcaactcaccattcacacacagagaagaagattggccttccagattttaataaggcttcactcattggtggatacc 32590808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 32601184 - 32601279
Alignment:
Q  162 tgagaaacatgatcaccaatttgactcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacc 257  Q
    |||||||||| |||||||||    ||||||||||||||| |||| ||||||||| ||||||||||| || ||| ||||||| |||| |||| ||||    
T  32601184 tgagaaacattatcaccaatccagctcaccattcacacatagagaagaagattggccttccagattttaataaggcttcactcattggtggatacc 32601279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 385 - 479
Target Start/End: Original strand, 32601544 - 32601638
Alignment:
Q  385 ttacccatgaagcaaatgtttttgcatcttgttcttcatgccctaattatcctggcattcttttactgcatgtttgatttctgcagagaaattgt 479  Q
    ||||||| |||||||||||||| |||||||||  |||||| |||| | |||| ||||| | |||||| || |||||||||||||| || ||||||    
T  32601544 ttacccaagaagcaaatgttttggcatcttgtatttcatgtcctagtgatccaggcatacgtttactacaagtttgatttctgcatagcaattgt 32601638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 32591076 - 32591169
Alignment:
Q  386 tacccatgaagcaaatgtttttgcatcttgttcttcatgccctaattatcctggcattcttttactgcatgtttgatttctgcagagaaattgt 479  Q
    |||||| |||||||||||||| |||||||||  |||||| || ||| |||| ||||| | |||||| || |||||||||||||| || ||||||    
T  32591076 tacccaagaagcaaatgttttggcatcttgtatttcatgtcccaatgatccaggcatacgtttactacaagtttgatttctgcatagcaattgt 32591169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 32601397 - 32601442
Alignment:
Q  276 cattattctcacaattatcatacttcaagtagtcaattccctaaag 321  Q
    ||||||| |||||||||||||||||||| ||||| | |||||||||    
T  32601397 cattattttcacaattatcatacttcaaatagtcgactccctaaag 32601442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 34594429 - 34594496
Alignment:
Q  254 taccgttctttgggggttacatcattattctcacaattatcatacttcaagtagtcaattccctaaag 321  Q
    |||| |||||| ||| ||| | |||| || |||||||||||||||||||| |||||||||||||||||    
T  34594429 tacctttctttagggcttataccattgttttcacaattatcatacttcaaatagtcaattccctaaag 34594496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 34578555 - 34578627
Alignment:
Q  185 actcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacc 257  Q
    |||||||||||||||| |||| ||||||||| |||||| || | || ||||||||||| |||| |||| ||||    
T  34578555 actcaccattcacacatagagaagaagattggccttccggagtttaataaagcttcactcattggtggatacc 34578627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 34594259 - 34594331
Alignment:
Q  185 actcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacc 257  Q
    ||||||||||||||||  ||| |||||||||||||||||||||  | ||| ||||||| |||| | |||||||    
T  34594259 actcaccattcacacattgagaagaagattgaccttccagatttcattaaggcttcactcattggcgggtacc 34594331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 424
Target Start/End: Original strand, 34594626 - 34594669
Alignment:
Q  381 tatattacccatgaagcaaatgtttttgcatcttgttcttcatg 424  Q
    |||| |||||| |||||||||||||| |||||||||||||||||    
T  34594626 tataatacccaagaagcaaatgttttagcatcttgttcttcatg 34594669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 34578745 - 34578787
Alignment:
Q  278 ttattctcacaattatcatacttcaagtagtcaattccctaaa 320  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||    
T  34578745 ttattttcacaattatcatacttcaaatagtcaactccctaaa 34578787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 34578890 - 34578983
Alignment:
Q  386 tacccatgaagcaaatgtttttgcatcttgttcttcatgccctaattatcctggcattcttttactgcatgtttgatttctgcagagaaattgt 479  Q
    |||||| |||||||||||||| |||||||||  |||||| || | | |||| ||||| | |||||| || ||| |||||||||| | |||||||    
T  34578890 tacccaagaagcaaatgttttggcatcttgtatttcatgtcccagtgatccaggcatacgtttactacaagttagatttctgcataaaaattgt 34578983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 35124433 - 35124478
Alignment:
Q  276 cattattctcacaattatcatacttcaagtagtcaattccctaaag 321  Q
    ||||||| |||||||||||||||||||| ||||| | |||||||||    
T  35124433 cattattttcacaattatcatacttcaaatagtcgactccctaaag 35124478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 35124578 - 35124671
Alignment:
Q  386 tacccatgaagcaaatgtttttgcatcttgttcttcatgccctaattatcctggcattcttttactgcatgtttgatttctgcagagaaattgt 479  Q
    |||||| |||||||||||||| |||||||||  |||||| |||| | |||| ||||| | |||||| || ||| ||||||| || | |||||||    
T  35124578 tacccaagaagcaaatgttttggcatcttgtatttcatgtcctagtgatccaggcatgcgtttactacaagttagatttctacataaaaattgt 35124671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 35124248 - 35124320
Alignment:
Q  185 actcaccattcacacaaagagtagaagattgaccttccagattgtactaaagcttcacccattcgtgggtacc 257  Q
    |||||||||||||||| |||| |||||||||  |||||||| | ||  || ||||||| |||| |||||||||    
T  35124248 actcaccattcacacatagagaagaagattggtcttccagagtttaacaaggcttcactcattggtgggtacc 35124320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University