View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13555_high_4 (Length: 584)
Name: NF13555_high_4
Description: NF13555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13555_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 242 - 574
Target Start/End: Original strand, 34697989 - 34698321
Alignment:
| Q |
242 |
gagaattttagaagacttacatgaataacgtcaactttaacaccgtcaatgcccaccgattccaaatgagagtgaagcccttcaaacatttcttgggcta |
341 |
Q |
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| T |
34697989 |
gagaattttagaagacttacatgaataacgtcaactttaacaccgtcaatgcccaccgattccaaatgagagtgaagcccttcaaacatttcttgggcta |
34698088 |
T |
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| Q |
342 |
aatttggtggcactaagcctacaccattgttaacaatcttatccaccgctaaatcctccattgtcatcttcagccccggagacagcttcggagtaacaac |
441 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34698089 |
aatttggtggcactaaccctacaccattgttaacaatcttatccaccgctaaatcctccattgtcatcttcagccccggagacagcttcggagtaacaac |
34698188 |
T |
|
| Q |
442 |
cttagcttcgggcatgcccttcactttaggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacattctcaacactcttaaactcttcc |
541 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34698189 |
cttagcttcgggcatgcccttcactttaggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacattctcaacactcttaaactcttcc |
34698288 |
T |
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| Q |
542 |
ttcaagtccctaataaaaccacccatgcctttg |
574 |
Q |
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| T |
34698289 |
ttcaagtccctaataaaaccacccatacctttg |
34698321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 34697813 - 34697943
Alignment:
| Q |
18 |
aaagattactactcaagtcaaatgaccatgaagtgaaccaccgctaaagtaaccgtatccgtatttgccttgtcaaacatgaaagagtgaaagcctactc |
117 |
Q |
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| T |
34697813 |
aaagactactactcaagtcaaatgaccatgaagtgaaccaccgctaaagtaaccgtatccgtatttgccttgtcaaacatgaaagagtg-aagcctactc |
34697911 |
T |
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| Q |
118 |
ggtataagatcatttaggaccacaaaaataaa |
149 |
Q |
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| T |
34697912 |
ggcataagatcatttaggaccacaaaaataaa |
34697943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 518
Target Start/End: Original strand, 43563873 - 43563921
Alignment:
| Q |
470 |
ggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacat |
518 |
Q |
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| T |
43563873 |
ggtctcacaccaccccaataaccacaaagtgcatgccaaacataaacat |
43563921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 518
Target Start/End: Original strand, 36431851 - 36431900
Alignment:
| Q |
469 |
aggtctaaccccaccccaatacccacaaagtgcatgccaaacataaacat |
518 |
Q |
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|||||| || ||||||||| |||||||||||||||||||||||||||| |
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| T |
36431851 |
aggtctcacaccaccccaagcaccacaaagtgcatgccaaacataaacat |
36431900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 516
Target Start/End: Original strand, 43639547 - 43639596
Alignment:
| Q |
467 |
ttaggtctaaccccaccccaatacccacaaagtgcatgccaaacataaac |
516 |
Q |
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||||| |||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
43639547 |
ttaggcctaatcccaccccaatacccacaaaaagcatgccacacataaac |
43639596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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