View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13555_high_9 (Length: 455)
Name: NF13555_high_9
Description: NF13555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13555_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 23 - 445
Target Start/End: Complemental strand, 5019989 - 5019567
Alignment:
| Q |
23 |
ttggtctcagaaaaagaacaaaattatcaatatatggttcaaaaaccaaaccaacttggtagcattactggagaaaggtgaccttgaattttggtcactt |
122 |
Q |
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| T |
5019989 |
ttggtctcagaaaaagaacaaaattatcaatatatggttcaaaaaccaaaccaacttggtagcattactggagaaaggtgaccttgaattttggtcactt |
5019890 |
T |
|
| Q |
123 |
gttcacaagcataatcatatcattgattcactgaagatagttcatatatccactatttggtcttacagtgaacaatcactatatcaacattattacattt |
222 |
Q |
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| T |
5019889 |
gttcacaagcataatcatatcattgattcactgaagatagttcatatatccactatttggtcttacagtgaacaatcactatatcaacattattacattt |
5019790 |
T |
|
| Q |
223 |
taagttcctgagtaatgtgagcaatcattaaaaaacgtattggataggtactaacagcgaacaaaaggaacaaaagtcgattatcattacaaactcaaat |
322 |
Q |
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| T |
5019789 |
taagttcctgagtaatgtgagcaatcattaaaaaacgtattggataggtactaacagcgaacaaaaggaacaaaagtcgattatcattacaaactcaaat |
5019690 |
T |
|
| Q |
323 |
ccaaacccaaacatgtaaaactcataagtcataactacctaggaacatataaattcagcacattatccttcaaaagcattccacatttcttaaacttggt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5019689 |
ccaaacccaaacatgtaaaactcataagtcataactacctaggaacatataaattcagcacattatccttcaaaagcattccacatttcttaaacttggt |
5019590 |
T |
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| Q |
423 |
ctttctacatagtcccccttcat |
445 |
Q |
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| T |
5019589 |
ctttctacatagtcccccttcat |
5019567 |
T |
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