View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13555_low_1 (Length: 666)
Name: NF13555_low_1
Description: NF13555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13555_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 19 - 648
Target Start/End: Complemental strand, 34145555 - 34144926
Alignment:
| Q |
19 |
aagaagcagaagagtttatcatacaaatgcctatcaaagaagatggtgtaatttggggagctttgcttaatgcctcgtgtttctggaacaacgtggaatt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34145555 |
aagaagcagaagagtttatcatacaaatgcctatcaaagcagatggtgtaatttggggagctttgcttaatgcctcgtgtttctggaacaacgtggaatt |
34145456 |
T |
|
| Q |
119 |
gggagagagagctgctgtgaagttgttcagtttggatccaaattcagtatctgctttagttactctgtctaatatgtatgccagacggggtagatggggg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34145455 |
gggagagagagctgctgtgaagttgttcagtttggatccaaattcagtatctgctttagttactctgtctaatatgtatgccagacggggtagatggggg |
34145356 |
T |
|
| Q |
219 |
aagaaaacaaaaattaggaagaggttacagagtttggaattgagaaaagatcaagggttcagctggatagagttgaataacaatgttcatctgttctctg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34145355 |
aagaaaacaaaaattaggaagaggttacagagtttggaattgagaaaagatcaagggttcagctggatagagttgaacaacaatgttcatctgttctctg |
34145256 |
T |
|
| Q |
319 |
tagaagatacaacacatccatattctgatgttatttacaaaactgtagagcatataaccgcaaccattaactctattgtaccgttcaattatctctatag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34145255 |
tagaagatacaacacatccatattctgatgttatttacaaaactgtagagcatataaccgcaaccattaactctatcgtaccgttcaattatctctatag |
34145156 |
T |
|
| Q |
419 |
cagcaatgacagatagtgtttctaatgcaacctgctttttatgatcttatctttctttcagatgtggccacttaaatattttcagtgaagcacacagttt |
518 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34145155 |
cagcaatgacagatagtgtttctaatgcaacctgctttttatgatcttatctttctttcagatgtggccacttaaatattttcagtgaagcacacagttt |
34145056 |
T |
|
| Q |
519 |
cctaaaaggtgagtttttcaaacttattgaatgggttaggttttgcaaaattagtttcagttaaaaaatgatttatacactcatactgaaattgtagtta |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34145055 |
cctaaaaggtgagtttttcaaacttattgaatgggttaggttttgcaaaattagtttcagttaaaaaatgatttatacactcatactgaaattgtagtta |
34144956 |
T |
|
| Q |
619 |
ttgggaagaacccaaatttcacattgaaaa |
648 |
Q |
| |
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||||||||||||||||||||||| |||||| |
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| T |
34144955 |
ttgggaagaacccaaatttcacactgaaaa |
34144926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 297 - 457
Target Start/End: Original strand, 29009948 - 29010108
Alignment:
| Q |
297 |
aacaatgttcatctgttctctgtagaagatacaacacatccatattctgatgttatttacaaaactgtagagcatataaccgcaaccattaactctattg |
396 |
Q |
| |
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|||||||||||| |||| ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29009948 |
aacaatgttcatatgttttctgtagaagataaaagacatccttattctgatgttatttacaaaactgtagagcatataaccgcaaccattaactctattg |
29010047 |
T |
|
| Q |
397 |
taccgttcaattatctctatagcagcaatgacagatagtgtttctaatgcaacctgctttt |
457 |
Q |
| |
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|||| ||||||||| || |||||| ||||| | ||| |||||||||||||| ||||||| |
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|
| T |
29010048 |
taccattcaattatatccatagcaacaatggcgactagagtttctaatgcaacttgctttt |
29010108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 29009838 - 29009945
Alignment:
| Q |
19 |
aagaagcagaagagtttatcatacaaatgcctatcaaagaagatggtgtaatttggggagctttgcttaatgcctcgtgtttctggaacaacgtggaatt |
118 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||||| ||||| ||||||||||||||||||||| | |
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| T |
29009838 |
aagaagcagaagagtttatcatacaaacgcctatcaaagcagatggtctaattcggggagctttgcttaacgcctcatgtttctggaacaacgtggaagt |
29009937 |
T |
|
| Q |
119 |
gggagaga |
126 |
Q |
| |
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|||||||| |
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|
| T |
29009938 |
gggagaga |
29009945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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