View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13555_low_11 (Length: 438)
Name: NF13555_low_11
Description: NF13555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13555_low_11 |
 | |
|
| [»] scaffold0157 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 418
Target Start/End: Original strand, 12465357 - 12465774
Alignment:
| Q |
19 |
cataatatatggatgaactgaggttacatggtccaattatttgatcttggaagatggaactagtaaccttaactttgttggtatgagattgattttcatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12465357 |
cataatatatggatgaactgaggttacatggtccaattatctgatcttggaagatggaactagtaaccttaactttgttggtatgagattgattttcatg |
12465456 |
T |
|
| Q |
119 |
gatctttgaaatgtcatctatatttataaggaaaacaaattaaaatagaaaaggcattatatatctgaagtaatttcttgttttaaaatagaacaaaata |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12465457 |
gatctttgaaatgtcatctatatatataaggaaaacaaattaaaatagaaaaggcattatatatctgaagtaatttcttgttttaaaatagaacaaaata |
12465556 |
T |
|
| Q |
219 |
tctagt-nnnnnnntatagtataatggatcctttaataaaatacttatttcgaggtgacacccatggctaaggagtcttactttcatgtacacattgctt |
317 |
Q |
| |
|
|||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12465557 |
tctagtaaaaaaaatatagtattatggatccttcaataaaatacttatttcgaggtgacacccatggctaaggagtcttactttcatgcacacattgctt |
12465656 |
T |
|
| Q |
318 |
atttatcatggaataacaacaaaca-cacac----------------tcatcatctattaatttttatttatattattctagtgtcaatgcgatcactaa |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12465657 |
atttatcatggaataacaacaaacaccacacacacacacacatatatttatcatctattaatttttatttatattatgctagtgtcaatgcgatcactaa |
12465756 |
T |
|
| Q |
401 |
tgtgtttgtcatattgct |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12465757 |
tgtgtttgtcatattgct |
12465774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 12484091 - 12484377
Alignment:
| Q |
19 |
cataatatatggatgaactgaggttacatggtccaattatttgatcttggaagatggaactagtaaccttaactttgttggtatgagattgattttcatg |
118 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| | |
|
|
| T |
12484091 |
cataatatatggatgaactaaggttacagggtccagttatctgatcttggaagatggaactagcaatcttaacttttttggtatgagattgattttcaag |
12484190 |
T |
|
| Q |
119 |
gatctttgaaatgtcatctatatttataaggaaaacaaattaaaatagaaaaggcattatatatctgaagtaatttcttgttttaaaatagaacaaaata |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||| | ||| || |||||| |
|
|
| T |
12484191 |
agtctttgaaatgtcatctgtatttataaggaaaacaaattaaaatcgaaaaggtgttatatatgtgaagtaatttcttttttgacaatggataaaaata |
12484290 |
T |
|
| Q |
219 |
tctagtnnnnnnntatagtataatggatcctttaataaaatacttatttcgaggtgacacccatggctaaggagtcttactttcatg |
305 |
Q |
| |
|
| |||| ||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12484291 |
tatagtaaaaaaatatagtataatggatacttcaataaaatacttatttggaggtgacacccatggctaaggagtcttcctttcatg |
12484377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 190 - 343
Target Start/End: Original strand, 12468155 - 12468309
Alignment:
| Q |
190 |
aatttcttgttttaaaatagaacaaaatatctagtnnnnnnn-tatagtataatggatcctttaataaaatacttatttcgaggtgacacccatggctaa |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12468155 |
aatttcttgttttaaaatagaacaaaatatctagtaaaaaaaatatagtattatggatccttcaataaaatacttatttcgaggtgacacctatggctaa |
12468254 |
T |
|
| Q |
289 |
ggagtcttactttcatgtacacattgcttatttatcatggaataacaacaaacac |
343 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12468255 |
ggagtcttactttcatgcacacattgcttatttatcatggaataacaacaaacac |
12468309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 350 - 425
Target Start/End: Original strand, 12468345 - 12468420
Alignment:
| Q |
350 |
atcatctattaatttttatttatattattctagtgtcaatgcgatcactaatgtgtttgtcatattgctcttttat |
425 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12468345 |
atcatcgattaatttttatttatattatgctagtgtcaatgcgatcactaatgtgtttgtcatattgcttttttat |
12468420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 425
Target Start/End: Original strand, 12484475 - 12484548
Alignment:
| Q |
350 |
atcatctattaatttttatttatattattctagtgtcaatgcgatcactaatgtgtttgtcatattgctcttttat |
425 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| | |||||||||||| |||||| ||||| | |||||| |
|
|
| T |
12484475 |
atcatctattaatttttatctat--tattctagtgtcaaggtgatcactaatgtttttgtcttattgtttttttat |
12484548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 36386 - 36100
Alignment:
| Q |
19 |
cataatatatggatgaactgaggttacatggtccaattatttgatcttggaagatggaactagtaaccttaactttgttggtatgagattgattttcatg |
118 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| | |
|
|
| T |
36386 |
cataatatatggatgaactaaggttacagggtccagttatctgatcttggaagatggaactagcaatcttaacttttttggtatgagattgattttcaag |
36287 |
T |
|
| Q |
119 |
gatctttgaaatgtcatctatatttataaggaaaacaaattaaaatagaaaaggcattatatatctgaagtaatttcttgttttaaaatagaacaaaata |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||| | ||| || |||||| |
|
|
| T |
36286 |
agtctttgaaatgtcatctgtatttataaggaaaacaaattaaaatcgaaaaggtgttatatatgtgaagtaatttcttttttgacaatggataaaaata |
36187 |
T |
|
| Q |
219 |
tctagtnnnnnnntatagtataatggatcctttaataaaatacttatttcgaggtgacacccatggctaaggagtcttactttcatg |
305 |
Q |
| |
|
| |||| ||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36186 |
tatagtaaaaaaatatagtataatggatacttcaataaaatacttatttggaggtgacacccatggctaaggagtcttcctttcatg |
36100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 425
Target Start/End: Complemental strand, 36002 - 35929
Alignment:
| Q |
350 |
atcatctattaatttttatttatattattctagtgtcaatgcgatcactaatgtgtttgtcatattgctcttttat |
425 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| | |||||||||||| |||||| ||||| | |||||| |
|
|
| T |
36002 |
atcatctattaatttttatctat--tattctagtgtcaaggtgatcactaatgtttttgtcttattgtttttttat |
35929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University