View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13555_low_16 (Length: 287)
Name: NF13555_low_16
Description: NF13555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13555_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 55 - 269
Target Start/End: Original strand, 12676310 - 12676524
Alignment:
| Q |
55 |
gaacacaagatctgcaatcaaaggacattaaaataaaacagagcaagtaaatcataaccgacggattcaatcaattaaagtcacattattttgaatatct |
154 |
Q |
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| T |
12676310 |
gaacacattatctgcaatcaaaggacattaaaataaaacatagcaagtaaatcataaccgacggattcaatcaattaaagtcacattattttgaatatct |
12676409 |
T |
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| Q |
155 |
cataagatacgtacgacattaaaagtgatccaatcatcattaaaaatgatgtaagcaaataacaaacatttagtctagattnnnnnnnnnntacagaatt |
254 |
Q |
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| T |
12676410 |
cataagatacgtactatattaaaagtgatccaatcatcattaaaaatgatgtaagcaaataacaaacttttagtctagattaaaaaaaatatacagaatt |
12676509 |
T |
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| Q |
255 |
actccatagagttca |
269 |
Q |
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| T |
12676510 |
actccatagagttca |
12676524 |
T |
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