View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13555_low_22 (Length: 236)
Name: NF13555_low_22
Description: NF13555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13555_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4250986 - 4250765
Alignment:
| Q |
1 |
ttccctattgaatgaagtttcgaactctgacaacaaagtctgcgattcatctctttcaatagcttttttgcatagataagcccaagctttgacgaacatg |
100 |
Q |
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| T |
4250986 |
ttccctattgaatgaaggttcgaactctgacaacaaagttggtgattcatctctttcaatagcttttttgcatagataagcccaagctttgacgaacatg |
4250887 |
T |
|
| Q |
101 |
gttgaagattttccatcaagaacagcatgatgagtgctgattccgatgctaaagccactatttgggaaaagggtgatttggagtgacataatagaagcaa |
200 |
Q |
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| T |
4250886 |
gttgaagattttccatcaagaacagcatgatgagtgctgattccgatgctaaaaccactatttgggaaaagggtgatttggagtgacataatagaagcaa |
4250787 |
T |
|
| Q |
201 |
aagaatctgatgattctaagtg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
4250786 |
aagaatctgatgattctaagtg |
4250765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 4233933 - 4233737
Alignment:
| Q |
23 |
aactctgacaacaaagtctgcgattcatctctttcaatagcttttttgcatagataagcccaagctttgacgaacatggttgaagattttccatcaagaa |
122 |
Q |
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||||||| ||||||||| || ||| ||| ||||||||| ||| ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
4233933 |
aactctggcaacaaagttggcagttcttctgtttcaatagttttgttgcatagatatgcccaagctttgatgaacatggttgaggattttccatcaagag |
4233834 |
T |
|
| Q |
123 |
cagcatgatgagtgctgattccgatgctaaagccactatttgggaaaagggtgatttggagtgacataatagaagcaaaagaatctgatgattctaa |
219 |
Q |
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| T |
4233833 |
cagcatgatgagtgcttattccaatggaaaaaccactttctggaaaaagggttatctgaactgagataatagaagcaaaagaatttgtcgattctaa |
4233737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 4095288 - 4095151
Alignment:
| Q |
86 |
gctttgacgaacatggttgaagattttccatcaagaacagcatgatgagtgctgattccgatgctaaagccactatttgggaaaagggtgatttggagtg |
185 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| || ||||| ||||| ||| ||| ||| | || || |||||||| || || | || |
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| T |
4095288 |
gctttgatgaacatggttgaagattttccatcaagaacagcatggtgtgtgcttattccaatggaaaaaccatttttcggaaaaagggttatctgaattg |
4095189 |
T |
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| Q |
186 |
acataatagaagcaaaagaatctgatgattctaagtga |
223 |
Q |
| |
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| T |
4095188 |
aaataatagaagcaaaagaatctgatgattctaagtga |
4095151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 4192404 - 4192249
Alignment:
| Q |
54 |
tttcaatagcttttttgcatagataagcccaagctttgacgaacatggttgaagattttccatcaagaacagcatgatgagtgctgattccgatgctaaa |
153 |
Q |
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||||||| | ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| || ||||| ||| ||| ||| |
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| T |
4192404 |
tttcaattgttttgttgcataaataagcccaagctttgatgaacatggttgaagattttccatcaagaacaccatggtgtgtgctagttctaatggaaaa |
4192305 |
T |
|
| Q |
154 |
gccactatttgggaaaagggtgatttggagtgacataatagaagcaaaagaatctg |
209 |
Q |
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||||| ||| | |||||||| || || | ||| |||||||||||||||||||||| |
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| T |
4192304 |
accacttttttgaaaaagggttatctgaactgaaataatagaagcaaaagaatctg |
4192249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 216
Target Start/End: Complemental strand, 4189248 - 4189102
Alignment:
| Q |
70 |
gcatagataagcccaagctttgacgaacatggttgaagattttccatcaagaacagcatgatgagtgctgattccgatgctaaagccactatttgggaaa |
169 |
Q |
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||||||||||||||||||||| | |||||||||||| ||||||||||||||| ||||||| || ||||| ||||| ||| ||| ||||| ||||| ||| |
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| T |
4189248 |
gcatagataagcccaagctttcatgaacatggttgatgattttccatcaagaccagcatggtgtgtgcttattccaatggaaaaaccactttttggaaaa |
4189149 |
T |
|
| Q |
170 |
agggtgatttggagtgacataatagaagcaaaagaatctgatgattc |
216 |
Q |
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||||| || || | ||| |||||||||||| | ||||||| |||||| |
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| T |
4189148 |
agggttatctgaattgaaataatagaagcagatgaatctgttgattc |
4189102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 216
Target Start/End: Complemental strand, 4196156 - 4195994
Alignment:
| Q |
54 |
tttcaatagcttttttgcatagataagcccaagctttgacgaacatggttgaagattttccatcaagaacagcatgatgagtgctgattccgatgctaaa |
153 |
Q |
| |
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||||||| | ||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||| |||| |||||| |||||||| ||||| ||| ||| |
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| T |
4196156 |
tttcaatggttttgttgcatagataagcccaagctttgatgaacatgattgaggattttccatctagaatagcatggtgagtgcttattccaatggaaaa |
4196057 |
T |
|
| Q |
154 |
gccactatttgggaaaagggtgatttggagtgacataatagaagcaaaagaatctgatgattc |
216 |
Q |
| |
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||||| | || |||| ||| || || | ||| |||||||||||||||||||| | |||||| |
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| T |
4196056 |
accactttccggaaaaaaggttatctgaattgagataatagaagcaaaagaatcagttgattc |
4195994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 4241638 - 4241529
Alignment:
| Q |
106 |
agattttccatcaagaacagcatgatgagtgctgattccgatgctaaagccactatttgggaaaagggtgatttggagtgacataatagaagcaaaagaa |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| ||| ||| |||| ||||| ||||| || ||||||||||| |||||||||||||||||| |
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| T |
4241638 |
agattttccatcaagaacagcatgatgagtgcttattccaatggaaaaaccacgttttggaaaaagagttatttggagtgagataatagaagcaaaagaa |
4241539 |
T |
|
| Q |
206 |
tctgatgatt |
215 |
Q |
| |
|
| || ||||| |
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| T |
4241538 |
tttgttgatt |
4241529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 4102736 - 4102683
Alignment:
| Q |
170 |
agggtgatttggagtgacataatagaagcaaaagaatctgatgattctaagtga |
223 |
Q |
| |
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||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||| |
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| T |
4102736 |
agggttatttggagtgaaataatggaagcaaaagaatctgttgattctaagtga |
4102683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 4246484 - 4246440
Alignment:
| Q |
68 |
ttgcatagataagcccaagctttgacgaacatggttgaagatttt |
112 |
Q |
| |
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||||||||||||||||||||||||| ||| ||| ||||||||||| |
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| T |
4246484 |
ttgcatagataagcccaagctttgatgaagatgattgaagatttt |
4246440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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