View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13555_low_5 (Length: 542)
Name: NF13555_low_5
Description: NF13555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13555_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 107 - 531
Target Start/End: Original strand, 39836433 - 39836853
Alignment:
| Q |
107 |
tatgtaatatatcatagctttgtttgtgatcatcaaaatttcaattcgtacctctaacacatattttcgtcatcaaaccatttcatgatatgtatatagt |
206 |
Q |
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| T |
39836433 |
tatgtagtacatcattactttgtttgtgatcatcaaaatttcaattcgtacctctaacacatattttcgtcatcaaaccatttcatgat--gtatatagt |
39836530 |
T |
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| Q |
207 |
aagt----atatcataattaactttgttcatgatcatcacaatttcaattcattgctccatcacttatgccaacacatgtatattttcctcgtcaaacca |
302 |
Q |
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| T |
39836531 |
aagttagtatatcataa----ctttgttcatgatcatcacaatttcaattcattgctccatcacttatgccaacacatatatattttcctcgtcaaacca |
39836626 |
T |
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| Q |
303 |
tcatatttcgttatcactccctttactagtggtccctaaaactctcattaatttgcaatttgactcatccactccatgtggtctggctcccccttactca |
402 |
Q |
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| T |
39836627 |
tcaaatttcgttatcactccctttactagtggtccctaaaactctcattaatttgcaatttgactcatccactcaatgtggtctggct-ccccttactca |
39836725 |
T |
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| Q |
403 |
tcact-ccccatgccatctcatcattttcctataataatggannnnnnnnnnnnnnnnaaggagaataatgtattattttttatttctaaaaatatgtaa |
501 |
Q |
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| T |
39836726 |
tcactcccccatgccatctcatcattttcctataataatgga--ttatatttttttttaaggagaataatgtattattttttatttctaaaaatatgtaa |
39836823 |
T |
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| Q |
502 |
atttgattaatttgttgttcccaccccttt |
531 |
Q |
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| T |
39836824 |
atttgattaatttcttgttcccaccccttt |
39836853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 39836268 - 39836392
Alignment:
| Q |
18 |
gttttgttctagatcgtctaaatttcaatttttagctcagtcatcaccgctgccaacacatattttcttcatcaaaccatttcataatgtatgtaatata |
117 |
Q |
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| T |
39836268 |
gttttgttctagatcgtctaaatttcaatttttagctcagtcatcac------------atattttcttcatcaaaccatttcataatgtatgtaatata |
39836355 |
T |
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| Q |
118 |
tca-tagctttgtttgtgatcatcaaaatttcaattc |
153 |
Q |
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| T |
39836356 |
tcattagctttgttcatgatcatctaaatttcaattc |
39836392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 39836488 - 39836577
Alignment:
| Q |
72 |
aacacatattttcttcatcaaaccatttcataatgtat---gtaa-----tatatcatagctttgtttgtgatcatcaaaatttcaattc |
153 |
Q |
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| T |
39836488 |
aacacatattttcgtcatcaaaccatttcatgatgtatatagtaagttagtatatcataactttgttcatgatcatcacaatttcaattc |
39836577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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