View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13555_low_8 (Length: 491)
Name: NF13555_low_8
Description: NF13555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13555_low_8 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Original strand, 10120940 - 10121427
Alignment:
| Q |
18 |
attctcacgtacaacatgcaccttttcttagaagtctcgtgaaaacatttattagtcggttttcacatggacttacacacnnnnnnnatccttttacttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
10120940 |
attctcacgtacaacatgcaccttttcttagaagtctcgtgaaaacatttattagtcggttttcacatggatttacacactttttttatccttttacttt |
10121039 |
T |
|
| Q |
118 |
tatgaacatcatttcataactatattttccagtgtgataacttcaagcttaaatgtgaccaattggaaatacttaaggcaataactatattttacttgga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10121040 |
tatgaacatcatttcataactatattttccagtgtgataacttcaagcttaaatgtgaccaattggaaatagttaaggcaataactatattttacttgga |
10121139 |
T |
|
| Q |
218 |
ttttgctaataaatgggaatattaacaggctttaatcataagtcataacca-ttatcacactgttcacacaggaatctggccagaatccccaagttttag |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10121140 |
ttttgctaataaatgggaatattaacaggttttaatcataagtcataaccatttatcacactattcatacaggaatctggccagaatccccaagttttag |
10121239 |
T |
|
| Q |
317 |
agacactgacatgccaccagtgccacgtggatggaaaggccattgtcaaataggagaagcattcaatgcttcatcttgcaacaggtttttgattgaatca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10121240 |
agacactgacatgccaccagtgccacgtggatggaaaggccattgtcaaataggagaagcattcaatgcttcatcttgcaacaggtttttgattgaatca |
10121339 |
T |
|
| Q |
417 |
catgctcatcatc-------------ttgacttcatatgcattattaggttcaagttggaccgtcttcattggttaatcattgatagt |
491 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10121340 |
catgctcatcatctttttaattatttttgacttcatatgcattattaggttcaagttggaccgtcttcattggttaatcattgatagt |
10121427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 287 - 404
Target Start/End: Complemental strand, 30629012 - 30628895
Alignment:
| Q |
287 |
aggaatctggccagaatccccaagttttagagacactgacatgccaccagtgccacgtggatggaaaggccattgtcaaataggagaagcattcaatgct |
386 |
Q |
| |
|
|||||| ||||||||||| |||||||| || ||||| |||||||| ||||||||| || |||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
30629012 |
aggaatttggccagaatctccaagtttcagtgacaccgacatgcctgcagtgccacaagggtggaaaggtcattgtcaatcaggagaagcattcaatgcc |
30628913 |
T |
|
| Q |
387 |
tcatcttgcaacaggttt |
404 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
30628912 |
tcaacttgcaacaggttt |
30628895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University