View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13556_high_1 (Length: 468)
Name: NF13556_high_1
Description: NF13556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13556_high_1 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Complemental strand, 4669268 - 4668828
Alignment:
| Q |
15 |
tcaggttttatccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaaggcataaatgtcgaatacctatgatgtctcagc |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4669268 |
tcaggttttatccaagagttgatgggcccttcaaaatagtgcagaaaatcattaacaatgcttacaaggcataaatgtcgaatacctatgatgtctcagc |
4669169 |
T |
|
| Q |
115 |
agccttcaatgttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggagagaatgatacatatcac |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4669168 |
agccttcaatgttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggagaggatgatacatatcaa |
4669069 |
T |
|
| Q |
215 |
gattaatcatgacccttttcatttgtttctccattgcaccactatgttatcaactctaagccactacatttaaacgaattcatttttattacaagatcac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4669068 |
gattaatcatgacccttttcatttgtttctccattgcaccactatgttatcaactctaagccactacatttaaacgaattcatttttattacaagatcac |
4668969 |
T |
|
| Q |
315 |
gcttccattgatgcattaattattactactaattaatttggactctaggaagattaacgagttcatatttatcatgtgtatcgagaggcaaataaggcgc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4668968 |
gcttccattgatgcattaattattactactaattaatttggactctaggaagattaacgtgttcatatttatcatgtgtatcgagaggcaaataaggcgc |
4668869 |
T |
|
| Q |
415 |
aaatgatttggtgcgtggactatatagattgattgtgttct |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4668868 |
aaatgatttggtgcgtggactatatagattgattgtgttct |
4668828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 2791049 - 2790867
Alignment:
| Q |
26 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaaggcataaatgtcgaatacctatgatgtctcagcagccttcaatg |
125 |
Q |
| |
|
||||||| |||||| |||||||||||||| || ||||||| | | ||||||||||||| | || || | ||||||| |||||||||| ||||||||| |
|
|
| T |
2791049 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaatgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagcaaccttcaatg |
2790950 |
T |
|
| Q |
126 |
ttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggagagaatgataca |
208 |
Q |
| |
|
||| |||| ||||| ||||| |||||| |||| |||| | | ||||||| ||||||| ||||| |||||||| |||||||| |
|
|
| T |
2790949 |
ttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctgttcaacccggagaggatgataca |
2790867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 14472031 - 14471852
Alignment:
| Q |
26 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaaggcataaatgtcgaatacctatgatgtctcagcagccttcaatg |
125 |
Q |
| |
|
||||||| |||||| |||||||| ||||| |||||||||| | | ||||||||||||| | || || | ||||||| |||||||||| ||||||||| |
|
|
| T |
14472031 |
ccaagagctgatggtcccttcaagatagtacagaaaatcaatgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagcaaccttcaatg |
14471932 |
T |
|
| Q |
126 |
ttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggagagaatgat |
205 |
Q |
| |
|
||| ||| || || ||||| |||||||||||||||| || | |||||| |||||||| |||| |||| ||||||||| |
|
|
| T |
14471931 |
ttgccgaccttacaccatatctggatgatgaactagatataaactcgaggacgagttctactcaacccggggagaatgat |
14471852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 11674794 - 11674754
Alignment:
| Q |
305 |
acaagatcacgcttccattgatgcattaattattactacta |
345 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||||||| |
|
|
| T |
11674794 |
acaagatcatgtttccattgatgcatcaattattactacta |
11674754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 345
Target Start/End: Complemental strand, 11682255 - 11682227
Alignment:
| Q |
317 |
ttccattgatgcattaattattactacta |
345 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
11682255 |
ttccattgatgcattaattattactacta |
11682227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 5378502 - 5378323
Alignment:
| Q |
26 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaaggcataaatgtcgaatacctatgatgtctcagcagccttcaatg |
125 |
Q |
| |
|
||||||| |||||| |||||||||||||| || ||||||| | ||||||||||||| | || || | ||||||| |||||||||| ||||||||| |
|
|
| T |
5378502 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagcaaccttcaatg |
5378403 |
T |
|
| Q |
126 |
ttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggagagaatgat |
205 |
Q |
| |
|
||| ||| ||||| ||||| |||||||||||||||| || | |||||| |||||||| |||| | || ||||||||| |
|
|
| T |
5378402 |
ttgccgacctttcaccatatctggatgatgaactagatataaactcgaggacgagttctactcaaccgggggagaatgat |
5378323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 13719557 - 13719447
Alignment:
| Q |
98 |
acctatgatgtctcagcagccttcaatgttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggag |
197 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| ||||| ||||| |||||| |||| |||| | | ||||||| |||||| ||||| |||||| |
|
|
| T |
13719557 |
acctatggtgtctcagcaaccttcaatgttgtcgatctttcaccatatctggatgacgaaccagatatgaactcgagggcaagttctgttcaacccggag |
13719458 |
T |
|
| Q |
198 |
agaatgataca |
208 |
Q |
| |
|
|| | |||||| |
|
|
| T |
13719457 |
aggaagataca |
13719447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 91405 - 91587
Alignment:
| Q |
26 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaaggcataaatgtcgaatacctatgatgtctcagcagccttcaatg |
125 |
Q |
| |
|
||||||| |||||| |||||||||||||| || ||||||| | ||||||||||||| | || || | ||||||| |||||||||| ||||||||| |
|
|
| T |
91405 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagcaaccttcaatg |
91504 |
T |
|
| Q |
126 |
ttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggagagaatgataca |
208 |
Q |
| |
|
||| |||| ||||| ||||| |||||| |||| |||| | | ||||||| ||||||| ||||| |||| ||| |||||||| |
|
|
| T |
91505 |
ttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctgttcaatccggggaggatgataca |
91587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 16772940 - 16772758
Alignment:
| Q |
26 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaaggcataaatgtcgaatacctatgatgtctcagcagccttcaatg |
125 |
Q |
| |
|
||||||| |||||| |||||||||||||| || ||||||| | ||||||||||||| | || || | ||||||| |||||||||| ||||||||| |
|
|
| T |
16772940 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagcaaccttcaatg |
16772841 |
T |
|
| Q |
126 |
ttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggagagaatgataca |
208 |
Q |
| |
|
||| |||| ||||| ||||| ||||||||||| |||| | | ||||||| ||||||| ||||| | || ||| |||||||| |
|
|
| T |
16772840 |
ttgccgatctttcaccatatctggatgatgaaccagatatgaactcgagggcgagttctgttcaacctggggaggatgataca |
16772758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 32707830 - 32708012
Alignment:
| Q |
26 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaaggcataaatgtcgaatacctatgatgtctcagcagccttcaatg |
125 |
Q |
| |
|
||||||| |||||| |||||||||||||| || ||||||| | ||||||||||||| | || || | ||||||| |||||||||| ||||||||| |
|
|
| T |
32707830 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagcaaccttcaatg |
32707929 |
T |
|
| Q |
126 |
ttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggagagaatgataca |
208 |
Q |
| |
|
||| |||| ||||| ||||| |||||| |||| |||| | | ||||||| ||||||| ||||| |||| ||| |||||||| |
|
|
| T |
32707930 |
ttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctgttcaacccggggaggatgataca |
32708012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 12842552 - 12842734
Alignment:
| Q |
26 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaaggcataaatgtcgaatacctatgatgtctcagcagccttcaatg |
125 |
Q |
| |
|
||||||| |||||| |||||||||||||| || ||||||| | ||||||||||||| | || || | ||||||| |||||||||| ||||||||| |
|
|
| T |
12842552 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaattgccaggaacctatggtgtctcagcaaccttcaatg |
12842651 |
T |
|
| Q |
126 |
ttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggagagaatgataca |
208 |
Q |
| |
|
||| |||| ||||| ||||| |||||| |||| |||| | | ||||||| ||||||| ||||| |||| ||| |||||||| |
|
|
| T |
12842652 |
ttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctgttcaacccggggaggatgataca |
12842734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 11716208 - 11716390
Alignment:
| Q |
26 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaaggcataaatg-tcgaatacctatgatgtctcagcagccttcaat |
124 |
Q |
| |
|
||||||| |||||| |||||||||||||| || ||||||| | | ||||||||||||| | || || | | | ||||||| |||||||||| |||||||| |
|
|
| T |
11716208 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaatgacaatgcttacaaggtagaattgctagga-acctatggtgtctcagcaaccttcaat |
11716306 |
T |
|
| Q |
125 |
gttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggagagaatgataca |
208 |
Q |
| |
|
|||| |||| ||||| ||||| |||||| |||| |||| | | ||||||| ||||||| ||||| || | ||| |||||||| |
|
|
| T |
11716307 |
gttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctgttcaacccagggaggatgataca |
11716390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 24685 - 24503
Alignment:
| Q |
26 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaaggcataaatgtcgaatacctatgatgtctcagcagccttcaatg |
125 |
Q |
| |
|
||||||| |||||| |||||||||||||| || ||||||| | ||||||||||||| | || | | ||||||| |||||||||| ||||||||| |
|
|
| T |
24685 |
ccaagagctgatggtcccttcaaaatagttcaaaaaatcaacgacaatgcttacaaggtagaatttccaggaacctatggtgtctcagcaaccttcaatg |
24586 |
T |
|
| Q |
126 |
ttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggagagaatgataca |
208 |
Q |
| |
|
||| |||| ||||| ||||| |||||| |||| |||| | | ||||||| ||||||| ||||| || | ||| |||||||| |
|
|
| T |
24585 |
ttgccgatctttcaccatatctggatgacgaaccagatatgaactcgagggcgagttctgttcaacccagggaggatgataca |
24503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 14026632 - 14026814
Alignment:
| Q |
26 |
ccaagagttgatggccccttcaaaatagtgcagaaaatcattaataatgcttacaaggcataaatgtcgaatacctatgatgtctcagcagccttcaatg |
125 |
Q |
| |
|
||||||| |||||| ||| |||||||||| || ||||||| | | ||||||||||||| | || | | ||||||| |||||||||| ||||||||| |
|
|
| T |
14026632 |
ccaagagctgatggtcccctcaaaatagttcaaaaaatcaatgacaatgcttacaaggtagaatttccaggaacctatggtgtctcagcaaccttcaatg |
14026731 |
T |
|
| Q |
126 |
ttgtcgatatttcatcatatagggatgatgaactagatttatattcgagggtgagttctattcaaaccggagagaatgataca |
208 |
Q |
| |
|
||| |||| ||||| ||||| |||||| |||| | || | | ||||||| ||||| | ||||| |||| ||| |||||||| |
|
|
| T |
14026732 |
ttgccgatctttcaccatatctggatgacgaaccatatatgaactcgagggcgagttttgttcaacccggggaggatgataca |
14026814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University