View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13557_high_12 (Length: 264)
Name: NF13557_high_12
Description: NF13557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13557_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 14725805 - 14726043
Alignment:
| Q |
13 |
tcatcaatggcttcctccagtaaacgccctgctccaaccggtataacact--tcctttctttctcnnnnnnngatctttcttcaattggctaaaaacaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14725805 |
tcatcaatggcttcctccagtaaacgccctgctccaaccggtataacactcttcctttctttctctttttttgatctttcttcaattggctaaaaacaat |
14725904 |
T |
|
| Q |
111 |
gattttagggagaatcacattttttaggtttttctcaaaatgttacgctcgtaaacttctataagtcattattttgtttcaaaatcgcaacttttcctcg |
210 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14725905 |
gatttttgggagaatcacattttttaggtttttctcaaaatgttacgctcgtaaacttctataagtcattattttgtttcaaaatcgcaacttttcctcg |
14726004 |
T |
|
| Q |
211 |
aaataagctcttacttatcctgagttaaatcaccattgt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14726005 |
aaataagctcttacttatcctgagttaaatcaccattgt |
14726043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University