View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13557_high_3 (Length: 370)
Name: NF13557_high_3
Description: NF13557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13557_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 32825127 - 32824769
Alignment:
| Q |
1 |
acaaattgtgcaaaagcttgattaggataagccaagtctccaatttgatccaatttgcattcacttgaagccacaacaaagccaataccttctgcattgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32825127 |
acaaattgtgcaaaagcttgattaggataagccaagtctccaatttgattcaatttgtattcacttgaagccacaacaaagccaacaccttctgcattgc |
32825028 |
T |
|
| Q |
101 |
aatctatctccaacctgttggtttcagtgttcatctttaatcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32825027 |
aatctatctccaacctgttggtttcagtgttcatctttaatcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctc |
32824928 |
T |
|
| Q |
201 |
ggtcactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgtttttacgtagaaattgagtaccttgtctatatttgataagaacatggat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32824927 |
ggtcactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgtttttacgtagaaattgagtaccttgtctatatttgataagaacatggat |
32824828 |
T |
|
| Q |
301 |
ttgttctcggtttgttttgatggaaaaatcattgaagttttgtggattgtcaccttcat |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32824827 |
ttgttctcggtttgttttgatggaaaaatcattgaagttttgtggattgtcaccttcat |
32824769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 32808432 - 32808074
Alignment:
| Q |
1 |
acaaattgtgcaaaagcttgattaggataagccaagtctccaatttgatccaatttgcattcacttgaagccacaacaaagccaataccttctgcattgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32808432 |
acaaattgtgcaaaagcttgattaggataagccaagtctccaatttgattcaatttgtattcacttgaagccacaacaaagccaacaccttctgcattgc |
32808333 |
T |
|
| Q |
101 |
aatctatctccaacctgttggtttcagtgttcatctttaatcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32808332 |
aatctatctccaacctgttggtttcagtgttcatctttaatcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctc |
32808233 |
T |
|
| Q |
201 |
ggtcactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgtttttacgtagaaattgagtaccttgtctatatttgataagaacatggat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| || ||||||| ||||||||||||| |||| |
|
|
| T |
32808232 |
ggtcactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgttttcacatgaaaattgagaactctgtctatgtttgataagaacaaggat |
32808133 |
T |
|
| Q |
301 |
ttgttctcggtttgttttgatggaaaaatcattgaagttttgtggattgtcaccttcat |
359 |
Q |
| |
|
|| || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32808132 |
ttcttttcgatttgttttgatgggaaaatcattgaagttttgtggattgtcaccttcat |
32808074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University