View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13557_high_5 (Length: 332)
Name: NF13557_high_5
Description: NF13557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13557_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 39075118 - 39075436
Alignment:
| Q |
1 |
atcataaggaagacaaacttgaatatcaacactaccttcttctgctccaccaagcacaataactctaccaatatttcttttaagtccaacaccatttcta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39075118 |
atcataaggaagacaaacttgaatatcaacactaccttcttcttcaccaccaagcacaataactctaccaatatttcttttaagtccaacaccatttcta |
39075217 |
T |
|
| Q |
101 |
actgcaattgccttaccccaaccaaagtcattgccgtaataattgaaccgtggtgaactgcttgctatcaacaaattacttgatgatctacctgcctccg |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39075218 |
actgcaattggcttaccccaaccaaagtcattgccgtaataattgaaccgtggtgaactgcttgctatcaacaaattacttgatgatctacctgcctccg |
39075317 |
T |
|
| Q |
201 |
atatagacggggttttcaaccaagactcataattactcactaacttttcatgatgagattttgatgaaatctccttattcatttccattgcaattttacc |
300 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||| ||| ||||||||||||| | || ||| |||| ||||||||||| ||||||||||| |
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| T |
39075318 |
gtatagacggggttttcaaccaagactcatagttattcactaccttctcatgatgagattgtatagatatcaccttgttcatttccatagcaattttacc |
39075417 |
T |
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| Q |
301 |
aatcccactttccattaat |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
39075418 |
aatcccactttccattaat |
39075436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 4 - 318
Target Start/End: Original strand, 7398370 - 7398684
Alignment:
| Q |
4 |
ataaggaagacaaacttgaatatcaacactaccttcttctgctccaccaagcacaataactctaccaatatttcttttaagtccaacaccatttctaact |
103 |
Q |
| |
|
|||||||| | |||||| |||||||| ||||||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
7398370 |
ataaggaaaagaaacttcaatatcaatactaccttcttcttccccaccaagcacattaactataccaatatttcttttaagtccaacaccatttctaact |
7398469 |
T |
|
| Q |
104 |
gcaattgccttaccccaaccaaagtcattgccgtaataattgaaccgtggtgaactgcttgctatcaacaaattacttgatgatctacctgcctccgata |
203 |
Q |
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||||| | |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || ||| ||| || |
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| T |
7398470 |
gcaataggcttaccccaaccgaagtcattaccgtagtaattgaaccgtggtgaactgcttgctatcaacaaattacttgctgatttaactggctctagta |
7398569 |
T |
|
| Q |
204 |
tagacggggttttcaaccaagactcataattactcactaacttttcatgatgagattttgatgaaatctccttattcatttccattgcaattttaccaat |
303 |
Q |
| |
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| ||||| |||||||||||||| ||| || ||||| || ||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
7398570 |
tcgacggcgttttcaaccaagattcaatatcactcattatcttctcatgatgagattttgatgaaatctccttgttcatttccatagcaattttaccaat |
7398669 |
T |
|
| Q |
304 |
cccactttccattaa |
318 |
Q |
| |
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||||||||||||||| |
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|
| T |
7398670 |
cccactttccattaa |
7398684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 34174012 - 34174143
Alignment:
| Q |
1 |
atcataaggaagacaaacttgaatatcaacactaccttcttctgctccaccaagcacaataactctaccaatatttcttttaagtccaacaccatttcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| || |||| || | | ||||| |||| |||||| ||| ||||||||| ||||| ||| |
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|
| T |
34174012 |
atcataaggaagacaaacttgaatatcaatactaccttcttccgccccacaaaatatagtaactttaccgatatttttttgaagtccaaccccattccta |
34174111 |
T |
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| Q |
101 |
actgcaattgccttaccccaaccaaagtcatt |
132 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |
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|
| T |
34174112 |
actgcaattggcttaccccaaccaaagtcatt |
34174143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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