View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13557_low_2 (Length: 403)
Name: NF13557_low_2
Description: NF13557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13557_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 25 - 393
Target Start/End: Complemental strand, 6038343 - 6037975
Alignment:
| Q |
25 |
gagtggtgattaagatattcgttacacatttttcctatactgaaatgtttcaaatttgtcaaaagtcaataatagttatcatcatatgaactttcacctg |
124 |
Q |
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| T |
6038343 |
gagtggtgattaagatattcgtaacacatttttcctatactgaaatgtttcaaatttgtcaaaagtcaataatagttatcatcatatgaactttcatctg |
6038244 |
T |
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| Q |
125 |
agaattcataatagacataatcatcttcggacaaaaaatctatagtggcatcatatagaagacttaaatacttgatatgttctttacatcactaccaaaa |
224 |
Q |
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| T |
6038243 |
agaatttataacagacataatcatcttcagacaaaaaatctatagtggcatcatatagaaaacttaaatacttgatatgttatttacatcactaccaaaa |
6038144 |
T |
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| Q |
225 |
tccttgacgcatataaagatattcaagctgaggacaaccatcaagaatagccagcaaaccttgattagttatctcgtctctgaaaagctggagacgacgg |
324 |
Q |
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| T |
6038143 |
tccttgacgcatataaagatattcaaggtgaggacaaccatcaagaatagccagcaaacctttattagttatctcgtctctgaaaagctggagacgacgg |
6038044 |
T |
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| Q |
325 |
aacccatgcatgtttagctcaatatcaaatgcctcctcatcatcgtcacttggattaccccgccctatg |
393 |
Q |
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| T |
6038043 |
aacccatgcatgtttagctcaatatcaaatgcctcctcatcatcgtcacttggattaccccgctctatg |
6037975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 368
Target Start/End: Original strand, 6132569 - 6132692
Alignment:
| Q |
245 |
attcaagctgaggacaaccatcaagaatagccagcaaaccttgattagttatctcgtctctgaaaagctggagacgacggaacccatgcatgtttagctc |
344 |
Q |
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| T |
6132569 |
attcaaggtgaagacagccatcaagaatagcaagcaaaccatcattagtcatcttgtttccaaaaagctggagatggcgtaatccaggcatggtttgcgc |
6132668 |
T |
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| Q |
345 |
aatatcaaatgcctcctcatcatc |
368 |
Q |
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|||| ||||||| || |||||||| |
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| T |
6132669 |
aatagcaaatgcatcatcatcatc |
6132692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 6046878 - 6046834
Alignment:
| Q |
240 |
aagatattcaagctgaggacaaccatcaagaatagccagcaaacc |
284 |
Q |
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| T |
6046878 |
aagagattcaaggtgaggacaaccatcaagaatagcacgcaaacc |
6046834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 6047197 - 6047169
Alignment:
| Q |
64 |
ctgaaatgtttcaaatttgtcaaaagtca |
92 |
Q |
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| T |
6047197 |
ctgaaatgtttcaaatttgtcaaaagtca |
6047169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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