View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13558_high_1 (Length: 407)
Name: NF13558_high_1
Description: NF13558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13558_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 369
Target Start/End: Complemental strand, 27099685 - 27099331
Alignment:
| Q |
16 |
atggggaacactgtaaatatcctatccaaccacaccctttcatgtcatttcaaaattaatatgacctccttcaaggaatggtattt-ccttccatcaaaa |
114 |
Q |
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| T |
27099685 |
atggggaacactgtaaatatcctatccaaccacaccctttcatgtcatttcaaaattaatatgacctccttcaaggaatggtattttccttccatcaaaa |
27099586 |
T |
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| Q |
115 |
ttttgaaacattcatgtagacaatacattcgtggtcgttggatcaagattaaatggtttaaatttcaatgctatttttaattctttttaaatagaaaata |
214 |
Q |
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| T |
27099585 |
ttttgaagcattcatgtagacaatacattcgtggtcgttggattaagattaaatggtttaaatttcaatgctatttttaattctttttaaatagaaaata |
27099486 |
T |
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| Q |
215 |
ccaaattaaaagtttagacggtttaatcttgattcaacggcatagatgtgttgactgtgtaaacgcgtcaaaatttgagtgcatgcactcatcatggtcc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099485 |
ccaaattaaaagtttagacggtttaatcttgattcaacggcatagatgtgttggctgtgtaaacgcgtcaaaatttgagtgcatgcactcatcatggtcc |
27099386 |
T |
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| Q |
315 |
ctcattcattcattatatagttcccataaacactaaatgcacacaataacttaac |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099385 |
ctcattcattcattatatagttcccataaacactaaatgcacacaataacttaac |
27099331 |
T |
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