View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13558_low_1 (Length: 523)
Name: NF13558_low_1
Description: NF13558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13558_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Complemental strand, 11080061 - 11079573
Alignment:
| Q |
18 |
cttaactctctcccccaactcattttcactcacaaacccatcttttgactcattcaattccaaagccactttccattcttgcaccaaaatcaatctattc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11080061 |
cttaactctctcccccaactcattttcactcacaaacccatcttttgactcattcaattccaaagccactttccattcttgcaccaaaatcaatctattc |
11079962 |
T |
|
| Q |
118 |
atcttctgctccgcgtaaagtggccacgttatcattggaactccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
11079961 |
atcttctgctccgcgtaaagtggccacgttatcattggaactccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccaa |
11079862 |
T |
|
| Q |
218 |
ctgagctatgtcttagtattgaaccttgtggtgcccagtttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11079861 |
ctgagctatgtcttagtattgaaccttgtggtgcccagtttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatc |
11079762 |
T |
|
| Q |
318 |
caaacttagttcctccgactccatatcgctcctaacaatccacaagaatctttgttcacttttttccaaaccaatagctatctcattaatttgagcctta |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
11079761 |
caaacttagttcctccgactccatatcgctcctaacaatccacaagaatctttgttcacttttttccaaaccaatagctatctgattaatttgagcctta |
11079662 |
T |
|
| Q |
418 |
gaaaatctccctaagcttccaaagctcaacaacacgacgctttgacctggctgtgaatcgagccaactcaaacacccacttttatcttc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11079661 |
gaaaatctccctaagcttccaaagctcaacaaaacgacgctttgacctggctgtgaatcgagccaactcaaacacccacttttatcttc |
11079573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 18 - 504
Target Start/End: Complemental strand, 11002920 - 11002434
Alignment:
| Q |
18 |
cttaactctctcccccaactcattttcactcacaaacccatcttttgactcattcaattccaaagccactttccattcttgcaccaaaatcaatctattc |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| | ||||||| |||| | |||||||||||| ||| ||| | |||||||||| | | ||| |
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|
| T |
11002920 |
cttaactctctcccccaactcatttccactcacaaaccctttttttgacccatttagttccaaagccaccttcatttcctcaaccaaaatcattttgttc |
11002821 |
T |
|
| Q |
118 |
atcttctgctccgcgtaaagtggccacgttatcattggaactccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccta |
217 |
Q |
| |
|
| | | || || || || | ||||| | ||||| || |||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||| | |
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|
| T |
11002820 |
aacctttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttccaacactgagttccatccacagtgagtcacgaatccaccaa |
11002721 |
T |
|
| Q |
218 |
ctgagctatgtcttagtattgaaccttgtggtgcccagtttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatc |
317 |
Q |
| |
|
|||| || || | ||||| | ||||||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
11002720 |
ctgattcgtgactcaatattgcatcttgtggtgcccaatttctcaccaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatc |
11002621 |
T |
|
| Q |
318 |
caaacttagttcctccgactccatatcgctcctaacaatccacaagaatctttgttcacttttttccaaaccaatagctatctcattaatttgagcctta |
417 |
Q |
| |
|
|||||| ||||||||| | | |||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| | ||||||||| |
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|
| T |
11002620 |
caaactaagttcctccaagtttgactcgctccttacaatccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagcctta |
11002521 |
T |
|
| Q |
418 |
gaaaatctccctaagcttccaaagctcaacaacacgacgctttgacctggctgtgaatcgagccaactcaaacacccacttttatct |
504 |
Q |
| |
|
||||||||||| | ||||||||| ||||| |||||||||||||||| || || || || |||||| ||||||||||| ||| |||| |
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|
| T |
11002520 |
gaaaatctccccatgcttccaaaactcaaaaacacgacgctttgactaggttgcgagtcaagccaaatcaaacacccattttcatct |
11002434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 148 - 491
Target Start/End: Complemental strand, 11019171 - 11018828
Alignment:
| Q |
148 |
atcattggaactccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccacctactgagctatgtcttagtattgaaccttgtg |
247 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| || ||| |||| || | ||| | | |||||| |
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|
| T |
11019171 |
atcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgtg |
11019072 |
T |
|
| Q |
248 |
gtgcccagtttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaacttagttcctccgactccatatcgct |
347 |
Q |
| |
|
| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| | | || || || || || |
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|
| T |
11019071 |
gggcccaatttctcacaaccattcccttgtcctttgtcctctccaaaaacccttctggaaataactcgtccaaactcaacttgtctgagtctggttcact |
11018972 |
T |
|
| Q |
348 |
cctaacaatccacaagaatctttgttcacttttttccaaaccaatagctatctcattaatttgagccttagaaaatctccctaagcttccaaagctcaac |
447 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||| | ||||||| |||||||||| || | |||||||||||||||| |
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|
| T |
11018971 |
cctaacaacccacaagaatctttgctcacttttctccaatccaatagctatctcattcaattgagccctagaaaatcttcccatgcttccaaagctcaac |
11018872 |
T |
|
| Q |
448 |
aacacgacgctttgacctggctgtgaatcgagccaactcaaaca |
491 |
Q |
| |
|
|||||||||||||||| ||| || || ||||||||||||||||| |
|
|
| T |
11018871 |
aacacgacgctttgacttggttgcgagtcgagccaactcaaaca |
11018828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 157 - 463
Target Start/End: Complemental strand, 10968601 - 10968295
Alignment:
| Q |
157 |
actccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccacctactgagctatgtcttagtattgaaccttgtggtgcccagt |
256 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| | ||| ||| ||| ||||| ||||||||||||||| | |
|
|
| T |
10968601 |
actccttcacaaatagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatattgcaccttgtggtgcccaat |
10968502 |
T |
|
| Q |
257 |
ttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaacttagttcctccgactccatatcgctcctaacaat |
356 |
Q |
| |
|
|||| | ||||||||||| | |||||||||||||||||||||||| || | |||||| ||||||||| | ||||| | |||| || |||||||||| |
|
|
| T |
10968501 |
ttcttgccaccattcccttttgctttgtcctctccaaaaacccttcaggaagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaac |
10968402 |
T |
|
| Q |
357 |
ccacaagaatctttgttcacttttttccaaaccaatagctatctcattaatttgagccttagaaaatctccctaagcttccaaagctcaacaacacgacg |
456 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||| ||||||||||| | ||||||||||||||||| || | ||||||||| || |||||||||||| |
|
|
| T |
10968401 |
ccacaagaatctttgctcacttatttccaatccaagtgctatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacgacg |
10968302 |
T |
|
| Q |
457 |
ctttgac |
463 |
Q |
| |
|
||||||| |
|
|
| T |
10968301 |
ctttgac |
10968295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 157 - 462
Target Start/End: Complemental strand, 10982551 - 10982246
Alignment:
| Q |
157 |
actccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccacctactgagctatgtcttagtattgaaccttgtggtgcccagt |
256 |
Q |
| |
|
|||||||| || | |||||||||||| ||||||||||||||||| |||||||| ||||| | ||| ||| ||| ||||| ||||||||||||||| | |
|
|
| T |
10982551 |
actccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccgatcgagtcatgctttaatattgcaccttgtggtgcccaat |
10982452 |
T |
|
| Q |
257 |
ttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaacttagttcctccgactccatatcgctcctaacaat |
356 |
Q |
| |
|
|||| || ||||||||| | || ||||||||||||||||||||||| || | |||||| ||||||||| | ||||| | |||| |||||||||| || |
|
|
| T |
10982451 |
ttcttaccaccattcccctttcttttgtcctctccaaaaacccttcagggagcaactcgtccaaactttgctcctctaaatccaactcgctcctaataac |
10982352 |
T |
|
| Q |
357 |
ccacaagaatctttgttcacttttttccaaaccaatagctatctcattaatttgagccttagaaaatctccctaagcttccaaagctcaacaacacgacg |
456 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| ||||||||||| | ||||||||||||||||| || | ||||||||| || |||||||||||| |
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|
| T |
10982351 |
ccacaagaatctttgctcacttttttccaatccaagtgctatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacgacg |
10982252 |
T |
|
| Q |
457 |
ctttga |
462 |
Q |
| |
|
|||||| |
|
|
| T |
10982251 |
ctttga |
10982246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 11050287 - 11050229
Alignment:
| Q |
148 |
atcattggaactccttcgcaaatagcttccaacacggagttccatccacaatgagtcac |
206 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11050287 |
atcattggcaccccttcataaatagcttccaacacggagttccatccacaatgaatcac |
11050229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 497
Target Start/End: Original strand, 18300086 - 18300190
Alignment:
| Q |
393 |
agctatctcattaatttgagccttagaaaatctccctaagcttccaaagctcaacaacacgacgctttgacctggctgtgaatcgagccaactcaaacac |
492 |
Q |
| |
|
||||||||| || |||||| ||| ||||||| || |||||||||||||||| ||||| || ||||||| || || | | |||||||||||||||| |
|
|
| T |
18300086 |
agctatctcttttatttgacgctttaaaaatcttccatagcttccaaagctcaaaaacacaacactttgactaggttgcaagttgagccaactcaaacac |
18300185 |
T |
|
| Q |
493 |
ccact |
497 |
Q |
| |
|
||||| |
|
|
| T |
18300186 |
ccact |
18300190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 23628117 - 23628149
Alignment:
| Q |
173 |
cttccaacacggagttccatccacaatgagtca |
205 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
23628117 |
cttccaacaccgagttccatccacaatgagtca |
23628149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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