View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13558_low_3 (Length: 317)
Name: NF13558_low_3
Description: NF13558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13558_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 1956853 - 1956779
Alignment:
| Q |
235 |
tttttaccttgatgccatgataaggaatatcacaaaagatgtctcactaattgcaaaaccctttatcttcatctc |
309 |
Q |
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| T |
1956853 |
tttttacctagatgccatgataaggaatatcacaaaagatgtctcactaattgcaaaaccctttatcttcttctc |
1956779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 1941761 - 1941688
Alignment:
| Q |
236 |
ttttaccttgatgccatgataaggaatatcacaaaagatgtctcactaattgcaaaaccctttatcttcatctc |
309 |
Q |
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| T |
1941761 |
ttttacctagatgccatgagaaggaagattaaaaaagctgtctcactaattgcaaaaccctttatcttcttctc |
1941688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 309
Target Start/End: Complemental strand, 1927701 - 1927578
Alignment:
| Q |
187 |
aatattatgaaggtataaacataaataaaacaaaacaagttttagt-attttttaccttgatgccatgataaggaatatcacaaaagatgtctcactaat |
285 |
Q |
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| T |
1927701 |
aatattatgaaggtaaaaacatcaataaaataaaataattgtaatttattttttacctagatgccatgagaagaaatattgtaaaagctgtttcacttat |
1927602 |
T |
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| Q |
286 |
tgcaaaaccctttatcttcatctc |
309 |
Q |
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| T |
1927601 |
tgcaaaaccctttatcttcttctc |
1927578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 36774900 - 36774869
Alignment:
| Q |
1 |
atcacacttgttcttatgggatttaaaaatta |
32 |
Q |
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| T |
36774900 |
atcacacttgttcttatgggatttaaaaatta |
36774869 |
T |
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