View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13558_low_6 (Length: 248)
Name: NF13558_low_6
Description: NF13558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13558_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5414099 - 5414328
Alignment:
| Q |
1 |
cataggagagaggagggtcaatttgtgacatgatttttgactggttgctttcatataaacaacttgaacatagaaaaaggtgatatgccaaatatatatt |
100 |
Q |
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| T |
5414099 |
cataagagagaggagggtcaatttgtgacatgatttttgactggttgctttcatataaacaacttgaacatagaaaaaggtgatatgccaaatatatatt |
5414198 |
T |
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| Q |
101 |
taagagaaggaacatgcaatttttgttttatcttgtgtcagttgaatggaactcttttcaagaagtcaccgtgagattgaaggtaaaatattagagttca |
200 |
Q |
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| T |
5414199 |
taagagaaggaacatgcaatttttgttttatcttgtgtcagttgaatggaactcttttcaagaagtcaccgtgagattgaaggtaaaatattagagttca |
5414298 |
T |
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| Q |
201 |
aactttggagatagattctgacaccaacac |
230 |
Q |
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| T |
5414299 |
aactttggagatagattctgacaccaacac |
5414328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 65 - 212
Target Start/End: Original strand, 14087463 - 14087607
Alignment:
| Q |
65 |
tgaacatagaaaaaggtgatatgccaaatatatatttaagagaaggaacatgcaatttttgttttatcttgtgtcagttgaatggaactcttttcaagaa |
164 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || || |
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| T |
14087463 |
tgaacatagaaaaaggtgat--gccaaatatatatttaagagaaggaacatgcaatctt-gttttatcttgtgtcagttgaatggaactcttttgaataa |
14087559 |
T |
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| Q |
165 |
gtcaccgtgagattgaaggtaaaatattagagttcaaactttggagat |
212 |
Q |
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| T |
14087560 |
gtcaccatgtgattgaaggtaaaatattagaattcaaactttgtagat |
14087607 |
T |
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