View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13559_high_3 (Length: 603)
Name: NF13559_high_3
Description: NF13559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13559_high_3 |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 18 - 580
Target Start/End: Original strand, 48446289 - 48446850
Alignment:
| Q |
18 |
gtgaggatattttggtccatgaaaatttccctcgtgtttaaagtttggcaacccacatgagcagattctgattctacttataacacaggtgttccaacct |
117 |
Q |
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| T |
48446289 |
gtgaggatattttggtccatgaaaatttccctcgtgtttaaagtttggcaacccacatgagcagattctgattctacttataacacaggtgttccaactt |
48446388 |
T |
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| Q |
118 |
tgaagtttgtaattcatttaacaattgtgttttttagttctccaacttctatgctctccccacactatttaatacaaacacacagacacaggaatcagac |
217 |
Q |
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| T |
48446389 |
tgaagtttgtaattcatttaacaattgtgttttttagttctccaacttctatgctctccccacactatttaatgcaaacacacagacacaggaatcagac |
48446488 |
T |
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| Q |
218 |
gcagagagagcgaggtttcgctgtgtgtatggtcacttgcatttcattattttattagtagtcattttgcatctgaatctcatttcagtataccaattgt |
317 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48446489 |
gcagagagagcgaggtttcgctgtgtgtgtggtcacttgcatttcattattttattagtagtcattttgcatctgaatctcatctcagtataccaattgt |
48446588 |
T |
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| Q |
318 |
cacactatatataaatnnnnnnnggagagagacacaaacaagattctccaatatacacaccattggttaaaaccttagacaccattgtcggagcttgatc |
417 |
Q |
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| T |
48446589 |
cacactatatataaat-aaaaaaggagagagacacaaacaagattctccaatatacacaccattggttaaaaccttagacaccattgtcggagcttgatc |
48446687 |
T |
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| Q |
418 |
atattgttatttcatctgtgcatgttctgttcttttggggagatacttacttctgttctgttacattcattcatttcttgcctccttctcagtctcatca |
517 |
Q |
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| T |
48446688 |
atattgttatttcatctgagcatgttctgttcttttggggagatacttacttctgttcttttacattcattcatttcttgcctccttctcagtctcatca |
48446787 |
T |
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| Q |
518 |
gggtatgtatgtacatgtgtatatattcatgcattcattcattaccataatctttatttttct |
580 |
Q |
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| T |
48446788 |
gggtatgtatgtacatgtgtatatatacatgcattcattcatttccatattctttatttttct |
48446850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 55086 - 55142
Alignment:
| Q |
187 |
taatacaaacacacagacacaggaatcagacgcagagagagcgaggtttcgctgtgt |
243 |
Q |
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| T |
55086 |
taatacaaacacacagacacaagaatcagacgcagagagagcgaggtttcgctgtgt |
55142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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