View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13559_high_5 (Length: 533)
Name: NF13559_high_5
Description: NF13559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13559_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Original strand, 4145286 - 4145798
Alignment:
| Q |
19 |
gaatcatggtataatgttattcgaatcatggctgcatgtttcaaattacaagttttttaaactgtgtgattcataatcatcctaataaggtgattcaaaa |
118 |
Q |
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| T |
4145286 |
gaatcatggtataatgttattcgaatcatggctgcatgtttcaaattacaagttttttaaactgtgtgattcataatcatcctaataaggtgattcaaaa |
4145385 |
T |
|
| Q |
119 |
atcaacttggtaaaaaatgttgattcaaatcttgcttaaaggtgatt----tgaatcacctaagatttttgttccatgatttcagctagaaagttgtgat |
214 |
Q |
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| T |
4145386 |
atcaacttggtaaaaaatgttgattcaaatcatgcttaaaggtgatttgaatgaatcacctaagatttttgttccatgatttcagctagaaagttgtgat |
4145485 |
T |
|
| Q |
215 |
tcaaatcaacttacctaattgattcgaatacctaagtaatcttgagtcttgaatgtcgatttagggagttgtggttcgaaacaatttagtnnnnnnnngg |
314 |
Q |
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| T |
4145486 |
tcaaatcaacttacctaattgattcgaatacctaagtaatcttgaatcttgaatgtcgatttagggagttgtggttcgaaacaatttagtaaaaaaaagg |
4145585 |
T |
|
| Q |
315 |
attcgaatcaacctactaatgtattttgaatcatgcacactgnnnnnnnnnnnnnagattcttaatggttcaaaattgttttctcataatcattcctata |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145586 |
attcgaatcaacctactaatgtattttgaatcatgcacactgtttttttttttttagattcttaatggttcaaaattgttttctcataatcattcctata |
4145685 |
T |
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| Q |
415 |
gaaccataattcattcccacaacaacacttaaacattcgttccgctataaaattcctcattatgagatccaagttaaaactcttcttgattctaaacatt |
514 |
Q |
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| T |
4145686 |
gaaccataattcattcccacaacaacacttaaacattcgttccgctataaaattcctcattatgagatccaagttaaaactcttcttgattctaaacatt |
4145785 |
T |
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| Q |
515 |
atgtgatattgtt |
527 |
Q |
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| T |
4145786 |
atgtgatattgtt |
4145798 |
T |
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