View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13559_low_1 (Length: 907)

Name: NF13559_low_1
Description: NF13559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13559_low_1
NF13559_low_1
[»] chr1 (1 HSPs)
chr1 (12-886)||(48500860-48501734)


Alignment Details
Target: chr1 (Bit Score: 863; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 863; E-Value: 0
Query Start/End: Original strand, 12 - 886
Target Start/End: Original strand, 48500860 - 48501734
Alignment:
Q  12 acatcatcaccgtgtttaaaacctaacctcgccacatggagacgcatattatcaacacgtgtattaacccgaatgaatccatcataaaatccaactgtat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48500860 acatcatcaccgtgtttaaaacctaacctcgccacatggagacgcatattatcaacacgtgtattaacccgaatgaatccatcataaaatccaactgtat 48500959  T
Q  112 attccaactgcacgtgtgcttccaattggtggtgagctagaccgtacctgattattgactccttagcatcaataccttgaaatttaccattttgcccata 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48500960 attccaactgcacgtgtgcttccaattggtggtgagctagaccgtacctgattattgactccttagcatcaataccttgaaatttaccattttgcccata 48501059  T
Q  212 gtttctcgccagtttcatcgtcataaccggcgcgtagcctttcagaatccaaaaaccatgagactccgtcgcgtaagagaatttcggattcgatggcacg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501060 gtttctcgccagtttcatcgtcataaccggcgcgtagcctttcagaatccaaaaaccatgagactccgtcgcgtaagagaatttcggattcgatggcacg 48501159  T
Q  312 agtgtttgtaatcctacacccaattctcttataatgcaccattttgctattatgtacccaagggtgcgcatgaaacagagttcagtgtctacacctacgg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501160 agtgtttgtaatcctacacccaattctcttataatgcaccattttgctattatgtacccaagggtgcgcatgaaacagagttcagtgtctacacctacgg 48501259  T
Q  412 taataaagaaggttcttagcaccgaagctagtttctttgacaacgcagtttctagaaccggagcgagtaacgagtggaaatagagtgaacctgcttcgct 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501260 taataaagaaggttcttagcaccgaagctagtttctttgacaacgcagtttctagaaccggagcgagtaacgagtggaaatagagtgaacctgcttcgct 48501359  T
Q  512 aggcgcgtcgcaagcgcataaccaaaagagacgaatggtgaaaacaaggttgaagaaaatggagagagattctggtgtgtgcgagtctatgatccatgca 611  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501360 aggcgcgtcgcaagcacatagccaaaagagacgaatggtgaaaacaaggttgaagaaaatggagagagattctggtgtgtgcgagtctatgatccatgca 48501459  T
Q  612 atgggctctggtttgagtttttgaagctgggatctagggcaagtgctatcgtgcgctgtgggtgagttggatatgatttcttggaggagttggagaagga 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501460 atgggctctggtttgagtttttgaagctgggatctagggcaagtgctatcgtgcgctgtgggtgagttggatatgatttcttggaggagttggagaagga 48501559  T
Q  712 gtgggaggaaattagggttttctgaagagagtgtgcatttctcggaaatccaaagaggtttttgagtgttgaatggatggaagccttgtaagaataccat 811  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48501560 gtgggaggaaattagggttttctgaagagagtgtgcatttctcggaaatccaaagaggtttttgagtgttgaatggatggaagccttgtaagaataccat 48501659  T
Q  812 gaaggttactaaggcttctgagtctgacccaaaagttcgctctgctttgagataaatagaacgagttgaatcgtt 886  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48501660 gaaggttactaaggcttctgagtctgacccagaagttcgctctgctttgagataaatagaacgagttgaatcgtt 48501734  T

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