View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13559_low_10 (Length: 256)
Name: NF13559_low_10
Description: NF13559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13559_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 40643582 - 40643810
Alignment:
| Q |
10 |
aaaataaatcccctcaaagaatctcttgtcgtgcaaaagaagacaagaacccctcactctgaaattgataaattagaaactcttggtagtggtactccct |
109 |
Q |
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| T |
40643582 |
aaaataaatcccctcaaagaatctcttgtcgtgcaaaagaagacaagaacccctcactctgaaattgataaattagaaactcttggtagtggtactccct |
40643681 |
T |
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| Q |
110 |
tgaaatgaattggccacaattgatgagatatcatgactaatgtagatggataaaaagnnnnnnnagtaatataaaacgcttctattatgcataggtgaat |
209 |
Q |
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| T |
40643682 |
tggaatgaattggccacaattgatgagatatcatgactaatgtagatggataaaaagtttttttagtaatataaaacgcttctattatgcataggtgaat |
40643781 |
T |
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| Q |
210 |
ctactccggtattgatttgatcggtgttt |
238 |
Q |
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| T |
40643782 |
ctactccggtattgatttgatcggtgttt |
40643810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 164
Target Start/End: Original strand, 40639635 - 40639700
Alignment:
| Q |
99 |
tggtactcccttgaaatgaattggccacaattgatgagatatcatgactaatgtagatggataaaa |
164 |
Q |
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| T |
40639635 |
tggtactcccttgaaatgaatttgccacaattgatgagctatcatgactaatgcagatggataaaa |
40639700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 40639521 - 40639596
Alignment:
| Q |
12 |
aataaatcccctcaaagaatctcttgtcgtgcaaaagaagacaagaacccctcactctgaaattgataaattagaa |
87 |
Q |
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| T |
40639521 |
aataaattccctcaaagagtaccttgtcgtgcaaaagaagacaagaacccctgactgtggaattgataaattagaa |
40639596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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