View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13559_low_2 (Length: 692)
Name: NF13559_low_2
Description: NF13559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13559_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 585; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 16 - 675
Target Start/End: Original strand, 49437272 - 49437929
Alignment:
| Q |
16 |
atagagtgtatttacttgtactcaaaaaacagagctgtggaccgatgagctaaccaaggctaaaaaactattttaaaacataaggatctttcaaatggaa |
115 |
Q |
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| T |
49437272 |
atagagtgtattttcttgaactcaaaaaacagagctgtggaccgatgagctaaccaagggtaaaaaactattttaaaacataaagatctttcaaatggaa |
49437371 |
T |
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| Q |
116 |
gatcttattgagatagaattcaaagttgcatatgtgtagtttataaatgatcctaagactatacatgatcatcccctttgttttacctctaacaaatgga |
215 |
Q |
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| T |
49437372 |
gatcttattgagatagaattcaaagttgcatatgtgtagtttataaatgatcctaagactatacatgatcatcccctttgttttacctctaacaaatgga |
49437471 |
T |
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| Q |
216 |
taaagtcatacacaaggtcaacaaatttaattgaagtatgataaatggattcaacaaatttataaaccnnnnnnntggaaagttgtagacttaatttcgg |
315 |
Q |
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| T |
49437472 |
taaagtcatacacaaggtcaacaaatttaattgaagtatgataaatggattcaacaaatttataaaccaaaaaa-tggaaagttgtagacttaatttcgg |
49437570 |
T |
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| Q |
316 |
taacaaacaagtttatnnnnnnntatgtctacaagtttacgggataatttttccttcacttgtgcaccaacacaaatttaatgacaatcaaggtttcaca |
415 |
Q |
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| T |
49437571 |
taacaaacaagtttataaaaaaa-atgtctacaagtttacgggataatttttccttcacttgtgcaccaacacaaatttcatgacaatcaaggtttcaca |
49437669 |
T |
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| Q |
416 |
ttacaaaccaacaaacctagcagctgcatcataaaagcaaattaaagtgaactgtctggggagaacctatatgcatttagtataacttcacatataggag |
515 |
Q |
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| T |
49437670 |
ttacaaaccaacaaacctagcagctgcatcataaaagcaaattaaagtgaactgtctggggagaacctatatgcatttagtataacttcacatataggag |
49437769 |
T |
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| Q |
516 |
agacccttgggcataaggataattctctttcaacttcgagagctttaacaccacagattgacattgtttgcaaaactcttgcattcttcagaatatatat |
615 |
Q |
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| T |
49437770 |
agacccttgggcataaggataattctctttcaacttcgagagctttaacaccacagattgacattgtttgcaaaactcttgcattcttcagaatatatat |
49437869 |
T |
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| Q |
616 |
tgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagttttgaggtg |
675 |
Q |
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| T |
49437870 |
tgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagttttgaggtg |
49437929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 43362474 - 43362425
Alignment:
| Q |
497 |
ataacttcacatataggagagacccttgggcataaggataattctctttc |
546 |
Q |
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| T |
43362474 |
ataacttcacatgtaggagaggcccttggacataaggacaattctctttc |
43362425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 617
Target Start/End: Complemental strand, 43362389 - 43362355
Alignment:
| Q |
583 |
ttgcaaaactcttgcattcttcagaatatatattg |
617 |
Q |
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| T |
43362389 |
ttgcaaaactcttgcattcttcacaatatatattg |
43362355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 613
Target Start/End: Original strand, 49445332 - 49445374
Alignment:
| Q |
571 |
gattgacattgtttgcaaaactcttgcattcttcagaatatat |
613 |
Q |
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| T |
49445332 |
gattgtcatggtttgcaaaactcttgcattcttcaaaatatat |
49445374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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