View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13559_low_4 (Length: 596)
Name: NF13559_low_4
Description: NF13559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13559_low_4 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Complemental strand, 89274 - 88713
Alignment:
| Q |
18 |
ataagagtatgagagagatgattgtgtaaaagttgtcctaaaataaatgtacaagtatcattactcaaactacaaatgatgattgaagagtgataggaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
89274 |
ataagagtatgagagagatgattgtgtaaaagttgtcctaaaataaatgtacaagtatcattactcaaactacaaatgatgattgaagagtgataggaac |
89175 |
T |
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| Q |
118 |
attcttttttaacactctccaacactcactcttgagtgaaatcaatgtggattctacattttggaaattagtcctatctaaaatagtggaaatcatatga |
217 |
Q |
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| T |
89174 |
attcttttttaacactctccaacactcactcttgagtgaaatcaatgcggattctacattttgaaaactagtcctatctaaagtagtggaaatcatataa |
89075 |
T |
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| Q |
218 |
attttagttagtaaaagagtgattgttagagagtcttaaaaataaagtgttcttttgttggaatattttaatatagatgaccaaaatcattaatacaaag |
317 |
Q |
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| T |
89074 |
attttagctggtaaaagagtgatcgttagagagtcttaaaaataaagtgttc-tttgttggaatattttaatatagatgaccaaaatcattgatacaagg |
88976 |
T |
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| Q |
318 |
ttatgtcatattataagaatacaattaattagggaccttgtatgatcgataaatcatatgggcgatggagtaaatcatgagagaagcgttagggttgaga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
88975 |
ttatgtcatattataagaatacaattaattagggaccttgtatgatcgataaatcatatgggcgat-gagtaaatcatgagagaagcgttagggttgaga |
88877 |
T |
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| Q |
418 |
gcttaaattttctatgttgcttttacgctgacctaaatggaatactc-gtatatataaacatcaacaaagagatgaacctttcaacgagctcaccaaaca |
516 |
Q |
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| T |
88876 |
gcttaaattttctatgttgcttttacgctgacct-aatggaatactcagtatgtataaacatcaacagagagatgaacctttcaacgagctcaccaaaca |
88778 |
T |
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| Q |
517 |
aataacccaactcaccgcagataataacaattaaatatttattcatattttagataggcaaaatt |
581 |
Q |
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| T |
88777 |
aataacccaactcaccgcagatcataacaattaaatatttattcatattttagataggcaaaatt |
88713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 29525294 - 29525230
Alignment:
| Q |
22 |
gagtatgagagagatgattgtgtaaaagttgtcctaaaataaatgtacaagtatcattactcaaa |
86 |
Q |
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| T |
29525294 |
gagtatgagagagaatattgtacaaaagttgtcataaaatgaatgtacaaatatcatttctcaaa |
29525230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 9985688 - 9985750
Alignment:
| Q |
22 |
gagtatgagagagatgattgtgtaaaagttgtcctaaaataaatgtacaagtatcattactca |
84 |
Q |
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| T |
9985688 |
gagtatgagagagaatgttgtataaaagttgtcataaaatagatgtacaaatatcatttctca |
9985750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 2854970 - 2855027
Alignment:
| Q |
22 |
gagtatgagagagatgattgtgtaaaagttgtcctaaaataaatgtacaagtatcatt |
79 |
Q |
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|||||||||||| | |||||| |||||||||| |||||| ||||||||| ||||||| |
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| T |
2854970 |
gagtatgagagaaaagattgtacaaaagttgtcataaaatgaatgtacaaatatcatt |
2855027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 17167909 - 17167853
Alignment:
| Q |
23 |
agtatgagagagatgattgtgtaaaagttgtcctaaaataaatgtacaagtatcatt |
79 |
Q |
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||||||||||||| | |||| ||||||||||| |||||| |||||||| ||||||| |
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| T |
17167909 |
agtatgagagagaaggttgtataaaagttgtcataaaatggatgtacaaatatcatt |
17167853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 28165190 - 28165126
Alignment:
| Q |
22 |
gagtatgagagagatgattgtgtaaaagttgtcctaaaataaatgtacaagtatcattactcaaa |
86 |
Q |
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|||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||| |||||| |
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| T |
28165190 |
gagtatgagagagaaaattgtctaaaagttgtcacaaaatggttgtacaagtatcatttctcaaa |
28165126 |
T |
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