View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13559_low_8 (Length: 293)
Name: NF13559_low_8
Description: NF13559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13559_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 22817492 - 22817744
Alignment:
| Q |
18 |
aaaagaacaaaaaattaccagcagcagcaccagcaccagcgttggagattaaacctctaatattatgactagtaccagaattttggcaattgttactcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22817492 |
aaaagaacaaaaaattaccagcagcagcaccagcaccagcgttggagattaaacctctgatattatgactagtaccagaattttggcaattgttactcat |
22817591 |
T |
|
| Q |
118 |
attagaatctaaaatcactcttttaattacaatttaacaaagttaattaacgaattaaaagcaacttaaatggtggaagaagcaaattcacatggtagat |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22817592 |
attagaatctaaaatcacccttttaattgcaatttaacaaagttaattaacgaatt-aaagcaacttaaatggtggaagaagcaaattcacatggtagat |
22817690 |
T |
|
| Q |
218 |
cttaacaaatttatctcattatataacattacatatggtgaagaagaagaagaa |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22817691 |
cttaacaaatttatctcattatataacattacatatggtgaagaagaagaagaa |
22817744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 53687423 - 53687377
Alignment:
| Q |
127 |
taaaatcactcttttaattacaatttaacaaagttaattaacgaatt |
173 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
53687423 |
taaaatcaccctttttattgcaatttaacaaagttaattaacgaatt |
53687377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 24994282 - 24994328
Alignment:
| Q |
127 |
taaaatcactcttttaattacaatttaacaaagttaattaacgaatt |
173 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||||||||||| |||| |
|
|
| T |
24994282 |
taaaatcaccctttttattgcaatttaacaaagttaattaactaatt |
24994328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University