View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_high_13 (Length: 355)
Name: NF1355_1D_high_13
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 23 - 338
Target Start/End: Complemental strand, 13653014 - 13652699
Alignment:
| Q |
23 |
acaactgacttcaacggttgagattcgagccatgtcatgcaggttctatccactttgaagaaattggagttgaaagatgatgatgttgnnnnnnncatgg |
122 |
Q |
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| T |
13653014 |
acaactgacttcaacggttgagattcgagccatgtcatgcaggttctatccactttgaagaaattggagttgaaagatgatgatgttgtttttttcatgg |
13652915 |
T |
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| Q |
123 |
tattgaggtggtggtgaagtgggccaatagtgtagagtttggggaagtggagacgaatttgggagagaattggggactctagatcttcaaatgtgttgag |
222 |
Q |
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| T |
13652914 |
tattgaggtggtggtgaagtgggccaatagtgtagagtttggggaagtggagacgaatttgggagagaattggggactctaaatcttcaaatgtgttgag |
13652815 |
T |
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| Q |
223 |
tattactgcattgcctttaagtgatgcttgggttagttgtaaaactttgtctaaaacgttatggtccattttgtttgatgtaccgaaacgtggaagatct |
322 |
Q |
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| T |
13652814 |
tattactgcattgcctttaagtgatgcttgggttagttgtaaaactttgtctaaaatgatatggtccattttgtttgatgtaccgaaacgtggaagatct |
13652715 |
T |
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| Q |
323 |
ctacatcgaatgatgt |
338 |
Q |
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| T |
13652714 |
ctacatcgaattatgt |
13652699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 13658487 - 13658254
Alignment:
| Q |
23 |
acaactgacttcaacggttgagattcgagccatgtcatgcaggttctatccactttgaagaaattg---------gagttgaaagatgatgatgttgnnn |
113 |
Q |
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| T |
13658487 |
acaaccgatttcaacggttgagattcaagccatgtcatgcaagttctatccacttcgaagaaattgctcttggaggaggaggacgatgacgatgatgttt |
13658388 |
T |
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| Q |
114 |
nnnncatggtattgaggtggtggtgaagtgggccaatagtgtagagtttggggaagtggagacgaatttgggagagaattggggactctagatcttcaaa |
213 |
Q |
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| T |
13658387 |
tttttgtggtgttgaggtggtggtgaagagggccaatggtgtagagtttaggggcatgaagacgaatttgagagagagctggggattctagattctcgaa |
13658288 |
T |
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| Q |
214 |
tgtgttgagtattactgcattgcctttaagtgat |
247 |
Q |
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| T |
13658287 |
cgtgttgagtattagtgcattgcctttaagtgat |
13658254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 247
Target Start/End: Complemental strand, 13647851 - 13647726
Alignment:
| Q |
122 |
gtattgaggtggtggtgaagtgggccaatagtgtagagtttggggaagtggagacgaatttgggagagaattggggactctagatcttcaaatgtgttga |
221 |
Q |
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||||||||| |||||||||| ||||| || ||||||||||| |||||||| | ||||||||||||||| | || || |||||||| ||||||||||||| |
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| T |
13647851 |
gtattgaggaggtggtgaagagggcctatggtgtagagtttagggaagtgaatacgaatttgggagaggactgaggcttctagatcctcaaatgtgttga |
13647752 |
T |
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| Q |
222 |
gtattactgcattgcctttaagtgat |
247 |
Q |
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|||| | |||||| ||||||||||| |
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| T |
13647751 |
gtatgaatgcatttgctttaagtgat |
13647726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 13647957 - 13647894
Alignment:
| Q |
25 |
aactgacttcaacggttgagattcgagccatgtcatgcaggttctatccactttgaagaaattg |
88 |
Q |
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| T |
13647957 |
aactgatttcaatggttgagagtcaagccacgccatgcaggttctatccactttgaagaaattg |
13647894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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