View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_high_15 (Length: 343)
Name: NF1355_1D_high_15
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 317
Target Start/End: Complemental strand, 48555742 - 48555430
Alignment:
| Q |
6 |
aagaataaatgggtctaaataattcatattttctttgnnnnnnnnn-tcagcaataggtggatacatacacggatttcattatataacatgggtattact |
104 |
Q |
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| T |
48555742 |
aagaataaatgggtctaaataattcatattttctttgaaaaaaaaaatcagcaataggtggatacatacacggatttcattatataacatgggtattact |
48555643 |
T |
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| Q |
105 |
ttacttgaaagtatgtaaatcctttgtataaagttgaactttgacacataatattagaaaatgcaacacctgcataaaaaatttctttagaggacgtnnn |
204 |
Q |
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| T |
48555642 |
ttacttgaaagtatgtaaatcctttgtataaagttgaactttgacacataatattacaaaatgcaacacctgcataaaaaatttctttagaggacgtaaa |
48555543 |
T |
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| Q |
205 |
nnnnntgaaaattagactgttctgttaaacaattcattaacaacttgacatcttttagatcaagtccatatgccgcaagaaagttttaaacttttaccat |
304 |
Q |
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| T |
48555542 |
aaaaatgaaaattagactgttctgttaaacaattcattaacaacttgacatcttttagatcaagtccatatgccccaagaaagttttaaacttttaccat |
48555443 |
T |
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| Q |
305 |
cacaactccatac |
317 |
Q |
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||||||||||||| |
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| T |
48555442 |
cacaactccatac |
48555430 |
T |
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