View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1355_1D_high_18 (Length: 311)

Name: NF1355_1D_high_18
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1355_1D_high_18
NF1355_1D_high_18
[»] chr7 (22 HSPs)
chr7 (75-290)||(45038122-45038330)
chr7 (1-68)||(48000782-48000849)
chr7 (1-71)||(7671934-7672004)
chr7 (1-74)||(29053334-29053407)
chr7 (1-74)||(34854715-34854788)
chr7 (1-74)||(41018248-41018321)
chr7 (5-68)||(15027591-15027654)
chr7 (1-68)||(11016914-11016981)
chr7 (1-68)||(38975850-38975917)
chr7 (1-68)||(42628340-42628407)
chr7 (1-74)||(27028813-27028886)
chr7 (19-68)||(48000720-48000769)
chr7 (1-68)||(4290590-4290657)
chr7 (37-74)||(42628315-42628352)
chr7 (7-74)||(45231874-45231937)
chr7 (38-74)||(29053396-29053432)
chr7 (9-45)||(30217503-30217539)
chr7 (37-68)||(41018309-41018340)
chr7 (21-74)||(4649387-4649440)
chr7 (38-70)||(7671993-7672025)
chr7 (32-68)||(11016895-11016931)
chr7 (1-41)||(22764753-22764793)
[»] scaffold0047 (2 HSPs)
scaffold0047 (1-74)||(63802-63875)
scaffold0047 (38-74)||(63777-63813)
[»] chr1 (37 HSPs)
chr1 (1-74)||(34062254-34062327)
chr1 (1-68)||(5995414-5995481)
chr1 (1-68)||(48993943-48994010)
chr1 (1-74)||(4609041-4609114)
chr1 (1-68)||(29179623-29179690)
chr1 (1-68)||(29371413-29371480)
chr1 (17-83)||(1819500-1819566)
chr1 (1-67)||(17127591-17127657)
chr1 (1-74)||(37155091-37155164)
chr1 (1-68)||(741528-741595)
chr1 (1-68)||(8337877-8337944)
chr1 (1-71)||(44706806-44706877)
chr1 (5-68)||(48498464-48498527)
chr1 (1-74)||(46333966-46334039)
chr1 (6-74)||(28928799-28928867)
chr1 (1-56)||(1091582-1091637)
chr1 (23-74)||(19711200-19711251)
chr1 (1-74)||(9157355-9157428)
chr1 (7-68)||(32540774-32540835)
chr1 (9-74)||(47303448-47303513)
chr1 (38-74)||(8337933-8337969)
chr1 (23-74)||(38674525-38674576)
chr1 (6-68)||(15220861-15220923)
chr1 (32-74)||(49444987-49445029)
chr1 (7-68)||(33219624-33219685)
chr1 (37-74)||(34062229-34062266)
chr1 (32-68)||(48993993-48994029)
chr1 (6-65)||(45728337-45728396)
chr1 (32-74)||(46334022-46334064)
chr1 (38-68)||(46932064-46932094)
chr1 (6-35)||(7788307-7788336)
chr1 (1-74)||(48604967-48605040)
chr1 (37-74)||(48823905-48823942)
chr1 (32-68)||(21630068-21630104)
chr1 (32-68)||(28395663-28395699)
chr1 (32-68)||(29179673-29179709)
chr1 (1-68)||(49444939-49445004)
[»] chr4 (31 HSPs)
chr4 (6-73)||(24006091-24006158)
chr4 (1-68)||(23444295-23444362)
chr4 (1-68)||(47661887-47661954)
chr4 (6-71)||(52028599-52028664)
chr4 (6-74)||(50384125-50384193)
chr4 (1-68)||(6271747-6271814)
chr4 (1-68)||(42375055-42375122)
chr4 (1-68)||(51265490-51265557)
chr4 (12-74)||(31430481-31430543)
chr4 (1-74)||(40789224-40789297)
chr4 (1-74)||(47404605-47404678)
chr4 (9-73)||(28693944-28694008)
chr4 (7-68)||(47762659-47762720)
chr4 (1-74)||(55090016-55090089)
chr4 (6-74)||(45591430-45591498)
chr4 (17-68)||(35682227-35682278)
chr4 (6-66)||(25818401-25818461)
chr4 (23-71)||(26186039-26186087)
chr4 (1-44)||(30861824-30861867)
chr4 (32-74)||(42375030-42375072)
chr4 (37-74)||(47404666-47404703)
chr4 (32-68)||(3862622-3862658)
chr4 (32-68)||(3871379-3871415)
chr4 (32-68)||(6271728-6271764)
chr4 (39-71)||(17285813-17285845)
chr4 (32-68)||(23444345-23444381)
chr4 (46-74)||(24006152-24006180)
chr4 (32-68)||(30861850-30861886)
chr4 (32-68)||(47661868-47661904)
chr4 (32-68)||(51265471-51265507)
chr4 (37-73)||(53954631-53954667)
[»] chr3 (18 HSPs)
chr3 (1-68)||(1801472-1801539)
chr3 (1-81)||(33689221-33689301)
chr3 (1-68)||(41753009-41753076)
chr3 (1-74)||(47677275-47677348)
chr3 (1-68)||(30476500-30476567)
chr3 (1-74)||(29031734-29031807)
chr3 (1-74)||(43139729-43139802)
chr3 (1-68)||(47492073-47492140)
chr3 (1-68)||(51046099-51046166)
chr3 (1-74)||(18321696-18321769)
chr3 (17-66)||(30734430-30734479)
chr3 (38-74)||(1801528-1801564)
chr3 (38-74)||(1801577-1801613)
chr3 (7-71)||(50550026-50550090)
chr3 (1-56)||(50524747-50524802)
chr3 (14-56)||(55223290-55223332)
chr3 (23-68)||(45103135-45103180)
chr3 (38-74)||(47677337-47677373)
[»] chr2 (17 HSPs)
chr2 (1-68)||(6217250-6217317)
chr2 (1-67)||(37961751-37961817)
chr2 (1-74)||(15011325-15011398)
chr2 (2-68)||(16514470-16514536)
chr2 (1-68)||(29508716-29508784)
chr2 (1-68)||(14470618-14470685)
chr2 (17-74)||(2828645-2828702)
chr2 (6-74)||(37762021-37762089)
chr2 (1-68)||(14229379-14229446)
chr2 (1-68)||(29925596-29925663)
chr2 (1-68)||(38933632-38933699)
chr2 (32-74)||(38933607-38933649)
chr2 (6-67)||(6722001-6722062)
chr2 (6-74)||(2894013-2894081)
chr2 (38-74)||(6217306-6217342)
chr2 (38-74)||(29925652-29925688)
chr2 (38-74)||(37961726-37961762)
[»] chr8 (19 HSPs)
chr8 (1-74)||(8243408-8243481)
chr8 (1-68)||(5033206-5033273)
chr8 (1-68)||(35440995-35441062)
chr8 (1-68)||(33841617-33841684)
chr8 (1-73)||(34541824-34541896)
chr8 (9-68)||(10086810-10086869)
chr8 (1-68)||(39851000-39851067)
chr8 (7-68)||(45191153-45191214)
chr8 (1-68)||(8796467-8796534)
chr8 (9-67)||(4958652-4958709)
chr8 (6-68)||(31159901-31159963)
chr8 (17-74)||(34229702-34229759)
chr8 (19-68)||(35031640-35031689)
chr8 (32-68)||(5033187-5033223)
chr8 (38-74)||(39850975-39851011)
chr8 (1-68)||(5667142-5667209)
chr8 (32-74)||(6296625-6296667)
chr8 (32-68)||(33841667-33841703)
chr8 (32-68)||(35441045-35441081)
[»] chr5 (19 HSPs)
chr5 (1-68)||(3899884-3899951)
chr5 (1-68)||(16971189-16971256)
chr5 (1-68)||(19655203-19655270)
chr5 (1-74)||(16439183-16439256)
chr5 (1-68)||(29699412-29699479)
chr5 (1-74)||(3180080-3180153)
chr5 (6-68)||(2953240-2953302)
chr5 (7-74)||(16802495-16802562)
chr5 (5-74)||(19598381-19598449)
chr5 (1-68)||(291142-291209)
chr5 (17-68)||(2093963-2094014)
chr5 (1-68)||(30117854-30117921)
chr5 (32-74)||(3899859-3899901)
chr5 (32-71)||(16971167-16971206)
chr5 (19-68)||(28818980-28819029)
chr5 (1-62)||(38134405-38134466)
chr5 (46-74)||(26662419-26662447)
chr5 (46-74)||(26934014-26934042)
chr5 (32-68)||(29699393-29699429)
[»] chr6 (10 HSPs)
chr6 (1-74)||(551185-551258)
chr6 (1-68)||(12343145-12343212)
chr6 (9-73)||(2315325-2315389)
chr6 (17-74)||(10521869-10521926)
chr6 (1-68)||(13043502-13043569)
chr6 (1-68)||(24618627-24618694)
chr6 (1-66)||(17750947-17751012)
chr6 (32-74)||(24618677-24618719)
chr6 (32-74)||(31654325-31654367)
chr6 (32-68)||(551241-551277)
[»] scaffold0481 (1 HSPs)
scaffold0481 (7-74)||(2907-2974)
[»] scaffold0016 (2 HSPs)
scaffold0016 (1-66)||(49731-49796)
scaffold0016 (32-74)||(49779-49821)
[»] scaffold1033 (1 HSPs)
scaffold1033 (8-71)||(2265-2328)
[»] scaffold1029 (1 HSPs)
scaffold1029 (8-71)||(2265-2328)
[»] scaffold0586 (1 HSPs)
scaffold0586 (1-57)||(7084-7140)
[»] scaffold0161 (1 HSPs)
scaffold0161 (1-67)||(27247-27313)
[»] scaffold0536 (1 HSPs)
scaffold0536 (14-68)||(4918-4972)
[»] scaffold0180 (1 HSPs)
scaffold0180 (9-62)||(19154-19207)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 75 - 290
Target Start/End: Complemental strand, 45038330 - 45038122
Alignment:
Q  75 aaggtcattatttaatttgccaataattaaaacgacaatgttttctttttcgataatataaaagacatttaatttctttgctaagcaacaatccaccctt 174  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  45038330 aaggtcattatttaatttgccagtaattaaaacgacaatgttttctttttcgataatataaaagacattt-----ctttgctaagcaacaatccaccctt 45038236  T
Q  175 caaaattgaccgagatcaatatagacatagaaaacttcccacattttcacatgaaatagacaagagaccctttacacaataaaattccatcgcatttgca 274  Q
    | |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45038235 ctaaattgaccga--tcaatatagacatagaaaacttcccacaatttcacatgaaatagacaagagaccctttacacaataaaattccatcgcatttgca 45038138  T
Q  275 tttcatgattcacatt 290  Q
    ||||||||||||||||    
T  45038137 tttcatgattcacatt 45038122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 48000782 - 48000849
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48000782 aatgccacaatgtttgtgtttctctctctttcacagacattgtggcattgtgattggtcaatgtcacc 48000849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7672004 - 7671934
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaa 71  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  7672004 aatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggctaatgtcacccaa 7671934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29053407 - 29053334
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| |||||||||| |||||    
T  29053407 aatgccacaatgtttgtgtttctctctctttcacaagcattgaggcattgtgattggccaatgtcaccaaactc 29053334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 34854788 - 34854715
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  34854788 aatgccacaatgtttgtgtttctatctctttcacaagcattgtggcattgtgattggccaatgtcaccaaactc 34854715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 41018321 - 41018248
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||| |||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||    
T  41018321 aatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtgattggccaatgtcacccaactc 41018248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 15027591 - 15027654
Alignment:
Q  5 ccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  15027591 ccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 15027654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11016914 - 11016981
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || |||||||||||||||||||  ||||||| |||||||||||||||||||||||    
T  11016914 aatgccacaatgcttgtgtttctctctctttcacaaacattgtgacattgtgattggtcaatgtcacc 11016981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 38975850 - 38975917
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| ||||||||||||| | |||| |||||||||||    
T  38975850 aatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattataattgatcaatgtcacc 38975917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 42628340 - 42628407
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| |||||||||||||||||||||| |||||| | |||||||||||| |||| |||||    
T  42628340 aatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtgattggccaatatcacc 42628407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27028886 - 27028813
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| |||||||||| ||||||||||||||||| | |||||||| |||||||||||  |||||| |||||||||    
T  27028886 aatgtcacaatgtttgtgtttctctctctttcagaagcattgtgacattgtgattgtccaatgttacccaactc 27028813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 48000769 - 48000720
Alignment:
Q  19 tttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  48000769 tttctctctctttcacaagcattgtggcattgtgattgatcaatgtcacc 48000720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4290590 - 4290657
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| |  ||||||||||||||||||| | |||||| |||||||||||| ||||||||||    
T  4290590 aatgccacaatgctcgtgtttctctctctttcacaagaattgtgacattgtgattggccaatgtcacc 4290657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 42628352 - 42628315
Alignment:
Q  37 gcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42628352 gcattgtggcattgtgattggtcaatgtcacccaactc 42628315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 45231937 - 45231874
Alignment:
Q  7 acaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||| || |||||||||||||||||||      |||||||||||||||||||||||||||||||||    
T  45231937 acaatgcttttgtttctctctctttcacaaa----gtggcattgtgattggtcaatgtcacccaactc 45231874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 29053396 - 29053432
Alignment:
Q  38 cattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||||||||||| ||||||||||||||||    
T  29053396 cattgtggcattgtgattggccaatgtcacccaactc 29053432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 30217539 - 30217503
Alignment:
Q  9 aatgtttatgtttctctctctttcacaggcattgtgg 45  Q
    ||||||||||||||||||||||||||| |||||||||    
T  30217539 aatgtttatgtttctctctctttcacaagcattgtgg 30217503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 41018309 - 41018340
Alignment:
Q  37 gcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||||||||||||||||||||    
T  41018309 gcattgtggcattgtgattggtcaatgtcacc 41018340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 4649387 - 4649440
Alignment:
Q  21 tctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||||||||| |||| ||| |||||||||||  |||||||||| |||||    
T  4649387 tctctctctttcacaagcatcgtgacattgtgattgaccaatgtcaccaaactc 4649440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 7671993 - 7672025
Alignment:
Q  38 cattgtggcattgtgattggtcaatgtcaccca 70  Q
    |||||||||||||||||||| ||||||||||||    
T  7671993 cattgtggcattgtgattggccaatgtcaccca 7672025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 11016931 - 11016895
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  11016931 cacaagcattgtggcattgtgattggccaatgtcacc 11016895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22764793 - 22764753
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcatt 41  Q
    |||| |||||||||| ||||||||||||||||||| |||||    
T  22764793 aatgtcacaatgtttgtgtttctctctctttcacaagcatt 22764753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 63802 - 63875
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||    
T  63802 aatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaactc 63875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 63813 - 63777
Alignment:
Q  38 cattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||||||||||| ||||||||||||||||    
T  63813 cattgtggcattgtgattggccaatgtcacccaactc 63777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34062254 - 34062327
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||| ||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  34062254 aatgccacaatgcttatgtttctctctctttcacaaacattgtgacattgtgattggtcaatgtcacccaactc 34062327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 5995414 - 5995481
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5995414 aatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacc 5995481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 48994010 - 48993943
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  48994010 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 48993943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4609041 - 4609114
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| |||||||||| ||||||||||||||||||| |||||||| |||||||||||  ||||||||||||||||    
T  4609041 aatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatgtcacccaactc 4609114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 29179690 - 29179623
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| ||||||||||||||| |||||||    
T  29179690 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcagtgtcacc 29179623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29371413 - 29371480
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| |||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||    
T  29371413 aatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatatcacc 29371480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 1819566 - 1819500
Alignment:
Q  17 tgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactcaaggtcatt 83  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| | ||||||    
T  1819566 tgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcacccaactctatgtcatt 1819500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17127657 - 17127591
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcac 67  Q
    |||| ||||||| || ||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  17127657 aatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcac 17127591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37155091 - 37155164
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||||| || ||||||||||||||||||| | |||||| |||||||||||| ||||||||||||||||    
T  37155091 aatgtcacaatgcttgtgtttctctctctttcacaagtattgtgacattgtgattggccaatgtcacccaactc 37155164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 741595 - 741528
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||| || ||||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  741595 aatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgggcaatgtcacc 741528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 8337944 - 8337877
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||| |||||||||||||||||||  ||||||| |||||||||||  ||||||||||    
T  8337944 aatgccacaatgtttgtgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcacc 8337877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 44706877 - 44706806
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggca-ttgtgattggtcaatgtcacccaa 71  Q
    |||||| ||||| || ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  44706877 aatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatttgtgattggccaatgtcacccaa 44706806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 48498464 - 48498527
Alignment:
Q  5 ccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||| ||||||||||||||||||| |||| ||  |||||||||||||||||||||||    
T  48498464 ccacaatgtttgtgtttctctctctttcacaagcatggtaacattgtgattggtcaatgtcacc 48498527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 46334039 - 46333966
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||||| || ||||| ||||||||||||| |||||||| |||||||||||| |||||||| |||||||    
T  46334039 aatgtcacaatgcttgtgtttttctctctttcacaagcattgtgacattgtgattggccaatgtcatccaactc 46333966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 28928867 - 28928799
Alignment:
Q  6 cacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||| ||||||||||||||||||| ||| |||| |||||||||||| |||||||||| |||||    
T  28928867 cacagtgtttgtgtttctctctctttcacaagcactgtgacattgtgattggccaatgtcaccaaactc 28928799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1091637 - 1091582
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattg 56  Q
    |||| |||||||||| ||||||||||||||||||| |||||||| |||||||||||    
T  1091637 aatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattg 1091582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 19711251 - 19711200
Alignment:
Q  23 tctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  19711251 tctctctttcacatgcattgtaacattgtgattggtcaatgtcacccaactc 19711200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9157355 - 9157428
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||||| || |||||||||||||||| || ||||||||  |||||||||| ||||||||| |||||||    
T  9157355 aatgtcacaatgcttgtgtttctctctctttctcaagcattgtgatattgtgattgatcaatgtcaaccaactc 9157428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 32540835 - 32540774
Alignment:
Q  7 acaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||| || ||||||||||||||||||| |||||||| |||||||||||| ||||| ||||    
T  32540835 acaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgccacc 32540774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 47303448 - 47303513
Alignment:
Q  9 aatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||| |||||||||||||||||||  ||||||| |||||||||||  |||||||||| |||||    
T  47303448 aatgtttgtgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcacctaactc 47303513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 8337933 - 8337969
Alignment:
Q  38 cattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||||||||||||||||||||||||||||    
T  8337933 cattgtggcattgtgattggtcaatgtcacccaactc 8337969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 38674576 - 38674525
Alignment:
Q  23 tctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||||||| |||||||| |||||||||||| |||| |||||||||||    
T  38674576 tctctctttcacaagcattgtgacattgtgattggccaatatcacccaactc 38674525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 15220861 - 15220923
Alignment:
Q  6 cacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||| || ||||||||||||||||||| ||||||||  ||||||||||| |||| |||||    
T  15220861 cacaatgcttgtgtttctctctctttcacaagcattgtgagattgtgattggccaatatcacc 15220923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 49444987 - 49445029
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||||||||||||||||||| ||||||||||||||||    
T  49444987 cacaagcattgtggcattgtgattggccaatgtcacccaactc 49445029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 33219624 - 33219685
Alignment:
Q  7 acaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||| || ||||| ||||||||||||| ||||| || ||||||||||| |||||||||||    
T  33219624 acaatgcttgtgtttttctctctttcacaagcattatgacattgtgattgatcaatgtcacc 33219685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 34062266 - 34062229
Alignment:
Q  37 gcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  34062266 gcattgtggcattgtgattggccaatgtcacccaactc 34062229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 48993993 - 48994029
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||||||||||||||    
T  48993993 cacaagcattgtggcattgtgattggtcaatgtcacc 48994029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 45728337 - 45728396
Alignment:
Q  6 cacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtc 65  Q
    ||||||| || ||||||||||||||||||| ||||| || |||||||||||  |||||||    
T  45728337 cacaatgcttgtgtttctctctctttcacaagcattatgacattgtgattgaccaatgtc 45728396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 46334022 - 46334064
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| |||||||| ||||||||||||||||||||| |||||||    
T  46334022 cacaagcattgtgacattgtgattggtcaatgtcatccaactc 46334064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 46932064 - 46932094
Alignment:
Q  38 cattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||||||||||||||||||||||    
T  46932064 cattgtggcattgtgattggtcaatgtcacc 46932094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 7788336 - 7788307
Alignment:
Q  6 cacaatgtttatgtttctctctctttcaca 35  Q
    ||||||||||||||||||||||||||||||    
T  7788336 cacaatgtttatgtttctctctctttcaca 7788307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 48605040 - 48604967
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||||| ||  ||||||||||||||||||   |||||| |||||||||||  |||||||||| |||||    
T  48605040 aatgtcacaatgcttgcgtttctctctctttcacaaatattgtgacattgtgattgaccaatgtcacctaactc 48604967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 48823942 - 48823905
Alignment:
Q  37 gcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  48823942 gcattgtgacattgtgattggccaatgtcacccaactc 48823905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 21630104 - 21630068
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| |||||||| |||||||||||||||||||||||    
T  21630104 cacaagcattgtgacattgtgattggtcaatgtcacc 21630068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 28395699 - 28395663
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| |||||||| |||||||||||||||||||||||    
T  28395699 cacaagcattgtgacattgtgattggtcaatgtcacc 28395663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 29179673 - 29179709
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  29179673 cacaagcattgtggcattgtgattggccaatgtcacc 29179709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 49445004 - 49444939
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || |||||||||||||  |||| |||||||  ||||||||||| || ||||||||    
T  49445004 aatgccacaatgcttgtgtttctctctct--cacaagcattgtaacattgtgattgatcgatgtcacc 49444939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 24006158 - 24006091
Alignment:
Q  6 cacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaact 73  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||    
T  24006158 cacaatgtttatgtttctctctctttcacaagcattgtgtcattgtgattggccaatgtcacccaact 24006091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 23444362 - 23444295
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  23444362 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 23444295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 47661887 - 47661954
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  47661887 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 47661954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 52028599 - 52028664
Alignment:
Q  6 cacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaa 71  Q
    |||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||||||||||||    
T  52028599 cacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaa 52028664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 50384193 - 50384125
Alignment:
Q  6 cacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||| || ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||    
T  50384193 cacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaactc 50384125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 6271747 - 6271814
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  6271747 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 6271814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 42375055 - 42375122
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  42375055 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcacc 42375122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 51265490 - 51265557
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  51265490 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattatgattggtcaatgtcacc 51265557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 31430543 - 31430481
Alignment:
Q  12 gtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||    
T  31430543 gtttgtgtttctctctctttcataagcattgtgacattgtgattggtcaatgtcacccaactc 31430481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 40789224 - 40789297
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| |||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||| ||||| |||||    
T  40789224 aatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatatcaccaaactc 40789297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 47404678 - 47404605
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||| ||  |||||||||||||||||| |||||||| |||||||||||  ||||||||||||||||    
T  47404678 aatgccacaatgcttgggtttctctctctttcacaagcattgtgacattgtgattgaccaatgtcacccaactc 47404605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 28694008 - 28693944
Alignment:
Q  9 aatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaact 73  Q
    ||||||| |||||||||||||||||||  |||||||  |||||||||||||||||||| ||||||    
T  28694008 aatgtttgtgtttctctctctttcacaaacattgtgatattgtgattggtcaatgtcatccaact 28693944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 47762659 - 47762720
Alignment:
Q  7 acaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||||||||||||||||| |||||||| |||| || |||  ||||||||||    
T  47762659 acaatgtttatgtttctctctctttcacaagcattgtgacattatggttgaccaatgtcacc 47762720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 55090089 - 55090016
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||||| || ||| ||||||||||||||| |||||||| |||||||||||  ||||||||| ||||||    
T  55090089 aatgtcacaatgcttgtgtctctctctctttcacaagcattgtgacattgtgattgaccaatgtcactcaactc 55090016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 45591498 - 45591430
Alignment:
Q  6 cacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||| ||||||||||||||||||| |||||||| |||| ||||||   |||| ||||||||||    
T  45591498 cacaatgtttgtgtttctctctctttcacaagcattgtgacattatgattgacgaatgccacccaactc 45591430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 35682227 - 35682278
Alignment:
Q  17 tgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||| ||||||||| |||||||| ||||||||| |||||||||||||    
T  35682227 tgtttctctatctttcacaagcattgtgacattgtgatcggtcaatgtcacc 35682278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 25818461 - 25818401
Alignment:
Q  6 cacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtca 66  Q
    ||||||| || |||||||||||||||||||  ||||||| |||||||||||  ||||||||    
T  25818461 cacaatgattgtgtttctctctctttcacaatcattgtgacattgtgattgaccaatgtca 25818401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 26186087 - 26186039
Alignment:
Q  23 tctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaa 71  Q
    ||||||||||||| |||||||| |||||||||||  |||||||||||||    
T  26186087 tctctctttcacaagcattgtgacattgtgattgaccaatgtcacccaa 26186039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30861867 - 30861824
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtg 44  Q
    |||||||||||| || ||||||||||||||||||| ||||||||    
T  30861867 aatgccacaatgcttgtgtttctctctctttcacaagcattgtg 30861824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 42375072 - 42375030
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||||||||||||||||||  ||||||||||||||||    
T  42375072 cacaagcattgtggcattgtgattgaccaatgtcacccaactc 42375030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 47404666 - 47404703
Alignment:
Q  37 gcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  47404666 gcattgtggcattgtgattgaccaatgtcacccaactc 47404703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 3862622 - 3862658
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  3862622 cacaagcattgtggcattgtgattggccaatgtcacc 3862658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 3871379 - 3871415
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  3871379 cacaagcattgtggcattgtgattggccaatgtcacc 3871415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 6271764 - 6271728
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  6271764 cacaagcattgtggcattgtgattggccaatgtcacc 6271728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 17285813 - 17285845
Alignment:
Q  39 attgtggcattgtgattggtcaatgtcacccaa 71  Q
    |||||| ||||||||||||||||||||||||||    
T  17285813 attgtgacattgtgattggtcaatgtcacccaa 17285845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 23444345 - 23444381
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  23444345 cacaagcattgtggcattgtgattggccaatgtcacc 23444381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 24006152 - 24006180
Alignment:
Q  46 cattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||||||||||||||||||||    
T  24006152 cattgtgattggtcaatgtcacccaactc 24006180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 30861850 - 30861886
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  30861850 cacaagcattgtggcattgtgattggccaatgtcacc 30861886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 47661904 - 47661868
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  47661904 cacaagcattgtggcattgtgattggccaatgtcacc 47661868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 51265507 - 51265471
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  51265507 cacaagcattgtggcattgtgattggccaatgtcacc 51265471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 53954667 - 53954631
Alignment:
Q  37 gcattgtggcattgtgattggtcaatgtcacccaact 73  Q
    |||||||| |||||||||||| |||||||||||||||    
T  53954667 gcattgtgacattgtgattggccaatgtcacccaact 53954631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 1801539 - 1801472
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  1801539 aatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggccaatgtcacc 1801472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 33689221 - 33689301
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactcaaggtca 81  Q
    |||| ||||||| || ||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| ||||    
T  33689221 aatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacccaactcaatgtca 33689301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 41753009 - 41753076
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||    
T  41753009 aatgccacaatgtttgtgtttctttctctttcacaagcattgtggcattgtgattggccaatgtcacc 41753076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 47677348 - 47677275
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| |||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||||||| |||||    
T  47677348 aatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgatcggtcaatgtcaccaaactc 47677275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30476567 - 30476500
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||| || ||||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  30476567 aatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 30476500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29031807 - 29031734
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| |||||||||| ||||||||||||||||||| |||||||| |||||||||||  |||| ||||| |||||    
T  29031807 aatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacctaactc 29031734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 43139802 - 43139729
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||| || ||||||||||||||||||| ||||| || |||||||||||  | ||||||||||||||    
T  43139802 aatgccacaatgcttgtgtttctctctctttcacaagcattctgacattgtgattgaccgatgtcacccaactc 43139729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 47492140 - 47492073
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||| || ||||||||||| ||||||| |||||||| |||||||||||| ||||||||||    
T  47492140 aatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtgattggccaatgtcacc 47492073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 51046166 - 51046099
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||| |||| || |||||||||||||||||||  ||||||| |||| |||||| |||||||||||    
T  51046166 aatgccataatgcttgtgtttctctctctttcacaaacattgtgacattatgattgatcaatgtcacc 51046099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18321696 - 18321769
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||| |||| ||||| ||||| ||||||| |||||||| |||||||||||  |||||||| |||||||    
T  18321696 aatgtcacaaagtttgtgtttttctctttttcacatgcattgtgacattgtgattgaccaatgtcatccaactc 18321769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 30734479 - 30734430
Alignment:
Q  17 tgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtca 66  Q
    ||||||||| ||||||||| |||||||| ||||||||| |||||||||||    
T  30734479 tgtttctctatctttcacaagcattgtgacattgtgatcggtcaatgtca 30734430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 1801528 - 1801564
Alignment:
Q  38 cattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||||||||||| ||||||||||||||||    
T  1801528 cattgtggcattgtgattggccaatgtcacccaactc 1801564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 1801577 - 1801613
Alignment:
Q  38 cattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||||||||||| ||||||||||||||||    
T  1801577 cattgtggcattgtgattggccaatgtcacccaactc 1801613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 50550026 - 50550090
Alignment:
Q  7 acaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaa 71  Q
    |||||| || |||||||||||||||||||  |||| || |||| |||||| ||||||||||||||    
T  50550026 acaatgcttgtgtttctctctctttcacaaacattatgacattatgattgatcaatgtcacccaa 50550090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 50524747 - 50524802
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattg 56  Q
    |||| |||||||||| ||||||||||||||||||| |||| ||  |||||||||||    
T  50524747 aatgtcacaatgtttgtgtttctctctctttcacaagcatcgtaacattgtgattg 50524802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 55223290 - 55223332
Alignment:
Q  14 ttatgtttctctctctttcacaggcattgtggcattgtgattg 56  Q
    |||||||||||||||||||||| |||||||| |||| ||||||    
T  55223290 ttatgtttctctctctttcacaagcattgtgacattatgattg 55223332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 45103180 - 45103135
Alignment:
Q  23 tctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||| |||||||| ||||||||||| ||||| |||||    
T  45103180 tctctctttcacaagcattgtgacattgtgattgatcaatatcacc 45103135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 47677337 - 47677373
Alignment:
Q  38 cattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  47677337 cattgtgacattgtgattgatcaatgtcacccaactc 47677373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 6217317 - 6217250
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  6217317 aatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggccaatgtcacc 6217250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 37961751 - 37961817
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcac 67  Q
    ||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37961751 aatgccataatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcac 37961817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15011325 - 15011398
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||| ||||||    
T  15011325 aatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcactcaactc 15011398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 16514470 - 16514536
Alignment:
Q  2 atgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||| |||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  16514470 atgccataatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 16514536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 29508784 - 29508716
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggca-ttgtgattggtcaatgtcacc 68  Q
    |||||| ||||| || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  29508784 aatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatttgtgattggtcaatgtcacc 29508716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 14470685 - 14470618
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| |||||||||| ||||||||||||||||||| ||||||   |||||||||||||||||||||||    
T  14470685 aatgtcacaatgtttgtgtttctctctctttcacaagcattgcaacattgtgattggtcaatgtcacc 14470618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 2828645 - 2828702
Alignment:
Q  17 tgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||||||||||| | |||||||| |||||||||||| ||||||||||||||||    
T  2828645 tgtttctctctctttcagaagcattgtgacattgtgattggccaatgtcacccaactc 2828702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 37762089 - 37762021
Alignment:
Q  6 cacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||| || ||||||| ||||||||||| |||||| | |||||||||||||||||||||| ||||||    
T  37762089 cacaatgcttgtgtttctttctctttcacaagcattgcgacattgtgattggtcaatgtcactcaactc 37762021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 14229446 - 14229379
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||| || ||||||||||||||||||| |||||||| |||||||||||  ||||||||||    
T  14229446 aatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatgtcacc 14229379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 29925663 - 29925596
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||| ||||||||||||||||||| ||||| || ||||||||  || ||||||||||    
T  29925663 aatgccacaatgtttgtgtttctctctctttcacaagcattctgacattgtgaggggccaatgtcacc 29925596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 38933632 - 38933699
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| |||| ||||||| ||| ||||||    
T  38933632 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattatgattggccaacgtcacc 38933699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 38933649 - 38933607
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  38933649 cacaagcattgtggcattgtgattggtcaatgtcacccaactc 38933607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 6722001 - 6722062
Alignment:
Q  6 cacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcac 67  Q
    ||||||| || |||||||||||||||||||  ||||||| |||||||||||| |||| ||||    
T  6722001 cacaatgcttgtgtttctctctctttcacaaacattgtgacattgtgattggccaatatcac 6722062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 2894013 - 2894081
Alignment:
Q  6 cacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||| || | ||||||||||||||||| |||||||| || ||||||||  |||||||| |||||||    
T  2894013 cacaatgcttgtatttctctctctttcacaagcattgtgacactgtgattgaccaatgtcatccaactc 2894081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 6217306 - 6217342
Alignment:
Q  38 cattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6217306 cattgtggcattgtgattggccaatgtcacccaactc 6217342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 29925652 - 29925688
Alignment:
Q  38 cattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||||||||||| ||||||||||||||||    
T  29925652 cattgtggcattgtgattggccaatgtcacccaactc 29925688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 37961762 - 37961726
Alignment:
Q  38 cattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| |||||||||||| |||||||||||||||||||    
T  37961762 cattatggcattgtgatcggtcaatgtcacccaactc 37961726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8243481 - 8243408
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||| || ||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  8243481 aatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattgatcaatgtcactcaactc 8243408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 5033206 - 5033273
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  5033206 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 5033273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 35441062 - 35440995
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  35441062 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 35440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 33841684 - 33841617
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| || ||||||||||||||||||||    
T  33841684 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacaatgtgattggtcaatgtcacc 33841617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 34541896 - 34541824
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaact 73  Q
    |||||||||||| || ||||||||||||||||||| ||||||||  ||| ||||||| |||||||||||||||    
T  34541896 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgatattatgattggccaatgtcacccaact 34541824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 10086810 - 10086869
Alignment:
Q  9 aatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||||||    
T  10086810 aatgtttgtgtttctctctctttcacaaacattgtgacattgtgattggtcaatgtcacc 10086869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39851000 - 39851067
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||| ||||||||||||||||||| ||||| |   ||||||||||||||||||||||    
T  39851000 aatgccacaatgtttgtgtttctctctctttcacaagcattataatattgtgattggtcaatgtcacc 39851067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 45191214 - 45191153
Alignment:
Q  7 acaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||| ||||||||||||||||| | |||||||||||||||||||  |||||||||||    
T  45191214 acaatgtttgtgtttctctctctttcataagcattgtggcattgtgattaatcaatgtcacc 45191153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 8796467 - 8796534
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||| || ||||||||| ||||||||| |||||||| |||| ||||||||||||||||||    
T  8796467 aatgtcacaatgcttgtgtttctctatctttcacaagcattgtgacattttgattggtcaatgtcacc 8796534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 4958652 - 4958709
Alignment:
Q  9 aatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcac 67  Q
    ||||||| ||||||||||||||||||| | |||||| | ||||||||||||||||||||    
T  4958652 aatgtttgtgtttctctctctttcacaagtattgtgac-ttgtgattggtcaatgtcac 4958709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 31159901 - 31159963
Alignment:
Q  6 cacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||| ||| ||||||||||||||||||| |||||||| |||| |||||||  |||||||||    
T  31159901 cacaatatttttgtttctctctctttcacaagcattgtgacattatgattggcgaatgtcacc 31159963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 34229702 - 34229759
Alignment:
Q  17 tgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||||||||||||| ||||||||  ||||||||||  |||||||||| |||||    
T  34229702 tgtttctctctctttcacaagcattgtgatattgtgattgaccaatgtcacctaactc 34229759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 35031689 - 35031640
Alignment:
Q  19 tttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||||| |||||| | ||||||||||| |||||||||||    
T  35031689 tttctctctctttcacaagcattgcgacattgtgattgatcaatgtcacc 35031640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 5033223 - 5033187
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||||||||||||||    
T  5033223 cacaagcattgtggcattgtgattggtcaatgtcacc 5033187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 39851011 - 39850975
Alignment:
Q  38 cattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||||||||||| ||||||||||||||||    
T  39851011 cattgtggcattgtgattggccaatgtcacccaactc 39850975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 5667142 - 5667209
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||| || | ||||||||||||||||| ||||| || |||||| ||||| ||||||||||    
T  5667142 aatgtcacaatgcttgtatttctctctctttcacaagcattatgacattgtaattggccaatgtcacc 5667209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 6296667 - 6296625
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||| || |||||||||||||||||||||||||||||    
T  6296667 cacaagcattatgacattgtgattggtcaatgtcacccaactc 6296625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 33841667 - 33841703
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  33841667 cacaagcattgtggcattctgattggtcaatgtcacc 33841703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 35441045 - 35441081
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  35441045 cacaagcattgtggcattgtgattggccaatgtcacc 35441081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3899884 - 3899951
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  3899884 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 3899951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 16971189 - 16971256
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  16971189 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcacc 16971256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19655203 - 19655270
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  19655203 aatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggacaatgtcacc 19655270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 16439183 - 16439256
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||||| || ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  16439183 aatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcacccaactc 16439256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29699412 - 29699479
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  29699412 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 29699479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3180153 - 3180080
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||| || |||||||||||||||||||  ||||||| |||| |||||| |||||||||||||||||    
T  3180153 aatgccacaatgcttgtgtttctctctctttcacaaacattgtgacattatgattgatcaatgtcacccaactc 3180080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 2953240 - 2953302
Alignment:
Q  6 cacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||| || ||||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  2953240 cacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 2953302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 16802495 - 16802562
Alignment:
Q  7 acaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||| ||| ||||||||||||||| ||| |||||||| |||| ||||||||||||||||| ||||||    
T  16802495 acaatatttgtgtttctctctcttttacaagcattgtgacattctgattggtcaatgtcactcaactc 16802562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 19598381 - 19598449
Alignment:
Q  5 ccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||| || ||||||||||||||||||| ||||| || |||| |||||||| |||||||||||||||    
T  19598381 ccacaatgcttgtgtttctctctctttcacaagcatt-tgacattatgattggttaatgtcacccaactc 19598449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 291142 - 291209
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || | ||||| |||||||||||  ||||||| ||||||||||| |||||||||||    
T  291142 aatgccacaatgcttgtatttctttctctttcacaaacattgtgacattgtgattgatcaatgtcacc 291209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 2094014 - 2093963
Alignment:
Q  17 tgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||||||| ||||| || ||||||||||| |||||||||||    
T  2094014 tgtttctctctctttcacaagcattatgacattgtgattgatcaatgtcacc 2093963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30117921 - 30117854
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||| ||||| |  ||||||| ||||||||||||||||| |||||    
T  30117921 aatgccacaatgcttgtgtttctctctttttcataaacattgtgacattgtgattggtcaatatcacc 30117854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 3899901 - 3899859
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||||||||||||||||||| ||||||||||||||||    
T  3899901 cacaagcattgtggcattgtgattggccaatgtcacccaactc 3899859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 16971206 - 16971167
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacccaa 71  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  16971206 cacaagcattgtggcattgtgattggccaatgtcacccaa 16971167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 28818980 - 28819029
Alignment:
Q  19 tttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    ||||||||||||||||| |||||||| |||| ||||||  ||||||||||    
T  28818980 tttctctctctttcacaagcattgtgacattatgattgaccaatgtcacc 28819029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38134466 - 38134405
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaat 62  Q
    |||| ||||||| || ||||||| ||||||||||  |||||||| |||||||||||| ||||    
T  38134466 aatgtcacaatgcttgtgtttctttctctttcactagcattgtgacattgtgattggccaat 38134405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 26662447 - 26662419
Alignment:
Q  46 cattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||||||||||||||||||||    
T  26662447 cattgtgattggtcaatgtcacccaactc 26662419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 74
Target Start/End: Complemental strand, 26934042 - 26934014
Alignment:
Q  46 cattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||||||||||||||||||||    
T  26934042 cattgtgattggtcaatgtcacccaactc 26934014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 29699429 - 29699393
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  29699429 cacaagcattgtggcattgtgattggccaatgtcacc 29699393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 551258 - 551185
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||||||||||| || |||||||||||||||||||  |||||||||||||||||||  ||||||||||||||||    
T  551258 aatgccacaatgcttgtgtttctctctctttcacaaacattgtggcattgtgattgaccaatgtcacccaactc 551185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 12343145 - 12343212
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||||||| || ||||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  12343145 aatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 12343212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 2315389 - 2315325
Alignment:
Q  9 aatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaact 73  Q
    |||| ||||||||| ||||||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  2315389 aatgcttatgtttcgctctctttcacaaacattgtgacattgtgattgatcaatgtcacccaact 2315325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 10521926 - 10521869
Alignment:
Q  17 tgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||||||||||| | |||||||| |||||||||||| |||||||||| |||||    
T  10521926 tgtttctctctctttcataagcattgtgacattgtgattggccaatgtcaccaaactc 10521869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 13043502 - 13043569
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||| || ||||||||||||||||||| ||||||||  ||||||||| | ||||||||||    
T  13043502 aatgtcacaatgcttgtgtttctctctctttcacaagcattgtgatattgtgattagccaatgtcacc 13043569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 24618694 - 24618627
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||| || ||||||||||||||||| | ||||| || ||||||||||| |||||||||||    
T  24618694 aatgtcacaatgcttgtgtttctctctctttcataagcattatgacattgtgattgatcaatgtcacc 24618627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17750947 - 17751012
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtca 66  Q
    |||| |||||||||| | ||| ||||||||||||| |||||||| ||||||||| || ||||||||    
T  17750947 aatgtcacaatgtttgtatttatctctctttcacaagcattgtgacattgtgatcggccaatgtca 17751012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 24618677 - 24618719
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| |||||||| |||||||||||||||| ||||||||||||    
T  24618677 cacaagcattgtgacattgtgattggtcaacgtcacccaactc 24618719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 31654367 - 31654325
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| |||||||| |||||||||||| ||||||||||||||||    
T  31654367 cacaagcattgtgacattgtgattggccaatgtcacccaactc 31654325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 551241 - 551277
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  551241 cacaagcattgtggcattgtgattggccaatgtcacc 551277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 2974 - 2907
Alignment:
Q  7 acaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    ||||||||| |||||||||||||||||||  ||||||| ||||||||||||||||| |||||||||||    
T  2974 acaatgtttgtgtttctctctctttcacaaacattgtgacattgtgattggtcaatatcacccaactc 2907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 49796 - 49731
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtca 66  Q
    |||||||||||| || ||||||||| ||||||||| |||||||| |||||||||||||||||||||    
T  49796 aatgccacaatgcttgtgtttctctttctttcacaagcattgtgacattgtgattggtcaatgtca 49731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 49779 - 49821
Alignment:
Q  32 cacaggcattgtggcattgtgattggtcaatgtcacccaactc 74  Q
    |||| ||||||||||||||||||||| |||||||||| |||||    
T  49779 cacaagcattgtggcattgtgattggccaatgtcacctaactc 49821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 2265 - 2328
Alignment:
Q  8 caatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaa 71  Q
    ||||| || ||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcgcccaa 2328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 2265 - 2328
Alignment:
Q  8 caatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacccaa 71  Q
    ||||| || ||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcgcccaa 2328  T

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Target: scaffold0586 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7140 - 7084
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattgg 57  Q
    |||| ||||||| || ||||||||||||||||||| |||||||| ||||||||||||    
T  7140 aatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 7084  T

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Target: scaffold0161 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27313 - 27247
Alignment:
Q  1 aatgccacaatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcac 67  Q
    |||||||||||| || ||||||||||||||||||| | ||| || |||||||||||| |||| ||||    
T  27313 aatgccacaatgcttctgtttctctctctttcacaagaattatgacattgtgattggccaatatcac 27247  T

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Target: scaffold0536 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 4972 - 4918
Alignment:
Q  14 ttatgtttctctctctttcacaggcattgtggcattgtgattggtcaatgtcacc 68  Q
    |||||||| ||||||||||||| |||||||   ||||||||||||| ||||||||    
T  4972 ttatgtttgtctctctttcacaagcattgtaatattgtgattggtcgatgtcacc 4918  T

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Target: scaffold0180 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 19207 - 19154
Alignment:
Q  9 aatgtttatgtttctctctctttcacaggcattgtggcattgtgattggtcaat 62  Q
    ||||||| ||||||||| |||| |||| |||||||| ||||||||||| |||||    
T  19207 aatgtttgtgtttctctttcttccacaagcattgtgacattgtgattgatcaat 19154  T

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