View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1355_1D_high_24 (Length: 271)
Name: NF1355_1D_high_24
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_high_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 6287114 - 6286953
Alignment:
| Q |
23 |
atatggttcaaatatggtatcagtttagtttttcctacctcccatggcttccatgaatggtaacaatcctttcacacccgttgagtggtgacagtgacac |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6287114 |
atatggttcaaatatggtatcagtttagtttttcctacctcacatggcttccatgaatggtaacaatcctttcacacccgttgagtggtgacagtgacac |
6287015 |
T |
|
| Q |
123 |
tttctgacaagaataagttgggatccgttgatagctcaattgctcaacctgctctagaacct |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6287014 |
tttctgacaagaataagttgggatccgttgatagctcaattgctcaacctgctctagaacct |
6286953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 6350482 - 6350442
Alignment:
| Q |
58 |
tacctcccatggcttccatgaatggtaacaatcctttcaca |
98 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
6350482 |
tacctcccatgacttccatgattggtaacaattctttcaca |
6350442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University