View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1355_1D_high_34 (Length: 211)
Name: NF1355_1D_high_34
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_high_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 28227176 - 28226978
Alignment:
| Q |
1 |
gaaattctaggcaaaatatataaactcaatgaaattacagctttttacaatacaagaaataccaatgtatagcagataataatagacagttagtcaggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
28227176 |
gaaattctaggcaaaatatataaactcaatgaaattacagctttttacaatacaaggaataccaatgtataaca-ataataatagacagttagtcaggta |
28227078 |
T |
|
| Q |
101 |
cacaagaggaacatattcaacaatatcttggcaaaactcttgcccgaacatgattgagcaaaacattgcggctaaacatatttgaaatctgaccgttcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28227077 |
cacaagaggaacatattcaacaatatcttggcaaaactcttgcccgaacatgattgagcaaaacattgcggctaaacatatttgaaatctgaccgttcat |
28226978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University