View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_high_4 (Length: 483)
Name: NF1355_1D_high_4
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 24 - 483
Target Start/End: Complemental strand, 28227628 - 28227169
Alignment:
| Q |
24 |
cctcctttgtcctttccatagtattcattatttttt-cccccttctgtcattccaattaaagcctaatgatcaaatttagggtgcaaacnnnnnnncacg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28227628 |
cctcctttgtcctttccatagtattcattatttttttcccccttctgtcattccaattaaagcctaatgatcaaatttagggtgcaaacaaaaaaacacg |
28227529 |
T |
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| Q |
123 |
attataactcatcccagctctaaatacattgtccaaagtactgtcgatgtgtgctttaagtaacatctgctttttattcacacaaaaaagtaacatgtgc |
222 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28227528 |
attatgactcatcccagctctaaatacattgtccaaagtactgtcgatgtgtgctttaagtaacatctgctttttattcacacaaaaaagtaacatgtgc |
28227429 |
T |
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| Q |
223 |
tgctgctctcttatatgtcttgttcctagtatttgacctgaagtactatgtataactcatgtccgctggcatttcacttgtaaattgcaaataaatatta |
322 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28227428 |
tgctgctctcttatatgtcctgttcctagtatttgacctgaagtactatgtataactcatgtccgctggcatttcacttgtaaattgcaaataaatatta |
28227329 |
T |
|
| Q |
323 |
taaagaaaagacacaataatacaatggttcaaaactttattatcctcagacaccttattttttgtattttatccaataatatttatcatgtaagcaagaa |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28227328 |
taaagaaaagacacaataatacaatggttcaaaactttattatcctcagacaccttat-ttttgtattttatccaataatatttatcatgtaagcaagaa |
28227230 |
T |
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| Q |
423 |
gttcgagacttacaatgatggaatattttctataccattccttctatcacgttgaaattct |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28227229 |
gttcgagacttacaatgatggaatattttctataccattccttctatcaggttgaaattct |
28227169 |
T |
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