View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1355_1D_high_8 (Length: 423)

Name: NF1355_1D_high_8
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1355_1D_high_8
NF1355_1D_high_8
[»] chr4 (17 HSPs)
chr4 (1-423)||(35969848-35970270)
chr4 (1-407)||(35974246-35974651)
chr4 (21-375)||(36634109-36634464)
chr4 (38-195)||(36641580-36641737)
chr4 (64-224)||(36663912-36664073)
chr4 (262-375)||(36641430-36641542)
chr4 (21-172)||(36661371-36661517)
chr4 (360-423)||(35970321-35970383)
chr4 (81-168)||(36632048-36632135)
chr4 (324-414)||(36911673-36911761)
chr4 (265-371)||(36663768-36663873)
chr4 (368-423)||(35970275-35970330)
chr4 (21-217)||(36911391-36911592)
chr4 (57-164)||(29678661-29678768)
chr4 (81-171)||(18361845-18361935)
chr4 (81-171)||(36600992-36601082)
chr4 (377-414)||(35970389-35970426)
[»] chr2 (1 HSPs)
chr2 (308-340)||(43429071-43429103)


Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 35969848 - 35970270
Alignment:
Q  1 ggtaacattcctcacatgcattttcataagattgattttgcagtgataatcaacattgttactttttctgcctacaggacgataaatcatccaatcaaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  35969848 ggtaacattcctcacatgcattttcataagattgattttgcagtgataatcaacattgttaccttttctgcctacaggacgataaatcatccaatgaaga 35969947  T
Q  101 gaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttctttgca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  35969948 gaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttatttgcg 35970047  T
Q  201 agcctttcttttaagatattagataagtgactgaaaaagaatcaaattttctgactttactacatgtttgatttgccaagcacttggtctatcacacgac 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35970048 ggcctttcttttaagatattagataagtgactgaaaaagaatcaaattttctgactttactacatgtttgatttgccaagcacttggtctatcacacgac 35970147  T
Q  301 ctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtgatatacttattcagcgaccatctcagagtatgtctc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35970148 ctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtgatatacttatttagcgaccatctcagagtatgtctc 35970247  T
Q  401 ggatactatattgttgtgatata 423  Q
    |||||||||||||||||||||||    
T  35970248 ggatactatattgttgtgatata 35970270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 35974246 - 35974651
Alignment:
Q  1 ggtaacattcctcacatgcattttcataagattgattttgcagtgataatcaacattgttactttttctgcctacaggacgataaatcatccaatcaaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||| |||||||  ||||| |||||||||||||| ||||    
T  35974246 ggtaacattcctcacatgcattttcataagattgattttgcagtaataactgacattgttactttctctgcctttaggacaataaatcatccaatgaaga 35974345  T
Q  101 gaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttctttgca 200  Q
     ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35974346 taaggtggggaagcaccaacctatcaccgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttctttgcg 35974445  T
Q  201 agcctttcttttaagatattagataagtgactgaaaaagaatcaaattttctgactttactacatgtttgatttgccaagcacttggtctatcacacgac 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||| |||||||||| || ||     
T  35974446 agcctttcttttaagatattagataagtgactgaaaaa-aatcaattttcatgactttactacatgtttgatttgccaagcatttggtctatcgcatgat 35974544  T
Q  301 ctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtgatatacttattcagcgaccatctcagagtatgtctc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||     
T  35974545 ctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtgatataattaattagcgaccatctcagagtatgtctt 35974644  T
Q  401 ggatact 407  Q
    |||||||    
T  35974645 ggatact 35974651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 375
Target Start/End: Complemental strand, 36634464 - 36634109
Alignment:
Q  21 ttttcataagattgattttgcagtgataatcaacattgttactttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaac 120  Q
    |||||||| |||| |||||||||||| ||   ||| |||| ||||||||||||  |||| ||| ||| ||| ||| | || |||||||  ||||||||||    
T  36634464 ttttcatatgattaattttgcagtgacaactgacagtgtttctttttctgcctttaggaggattaataatcaaatgacgataaggtggataagcaccaac 36634365  T
Q  121 ataacagcgactctccacttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttctttgcaagcctttcttttaagatatt 220  Q
     ||||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||| ||  | |||||||||||||| ||     
T  36634364 ctaacaacaactctccacttctagataatgagcagtgaagagttctcatatttcatacaaattacgatgccttctctgtgaacctttcttttaagacatc 36634265  T
Q  221 agataagtgactgaaaaagaatcaaattttctgactttact---acatgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtcc 317  Q
    |||||||| ||||||||| | |||  ||  |||||||||||   ||||||||||||||  ||||| |||||  |||||| || |||||||||||||||||    
T  36634264 agataagtaactgaaaaata-tcagtttggctgactttactgaaacatgtttgatttgagaagcatttggttgatcacatgaactcttcatttgaggtcc 36634166  T
Q  318 atgagattcatctagctgatagtctccaattttgaagccatattgtgatatacttatt 375  Q
    ||||| |||||||| ||| |||||||||||||| |||||| ||||| |||||||||||    
T  36634165 atgag-ttcatctaactggtagtctccaattttaaagccaaattgtaatatacttatt 36634109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 38 - 195
Target Start/End: Complemental strand, 36641737 - 36641580
Alignment:
Q  38 ttgcagtgataatcaacattgttactttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctcca 137  Q
    |||||||||||||  ||| ||||| |||||||||||  |||| |||||||||||   | |||| |||  || ||||||||||  ||||| ||||||||||    
T  36641737 ttgcagtgataattgacagtgttattttttctgcctttaggatgataaatcatcagctgaagataagaaggagaagcaccaatctaacaccgactctcca 36641638  T
Q  138 cttctagataatgggcagtgaagagttctcatatttcctacaagttacaatgtcttct 195  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||| ||| |||||    
T  36641637 cttctagataatgggcagtgaagagttctcatatttcatacaaattacgatgccttct 36641580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 224
Target Start/End: Complemental strand, 36664073 - 36663912
Alignment:
Q  64 ttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagt 163  Q
    ||||||||||  |||| ||||||||||| ||| ||||  |||||| ||||| ||||| ||||| |||||| ||||||||||||||||| |||||||||||    
T  36664073 ttttctgcctttaggatgataaatcatcaaatgaagatgaggtggagaagcgccaacctaacaccgactcaccacttctagataatggccagtgaagagt 36663974  T
Q  164 tctcatatttcc-tacaagttacaatgtcttctttgcaagcctttcttttaagatattagat 224  Q
    ||||||||| || | |  ||||||||| || |||||  | ||||||||||||||||| ||||    
T  36663973 tctcatattgcctttcttgttacaatgcctcctttgtgaacctttcttttaagatatcagat 36663912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 262 - 375
Target Start/End: Complemental strand, 36641542 - 36641430
Alignment:
Q  262 acatgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatatt 361  Q
    |||||||||| ||| |||||| |||||| |||||| || |||||||||||||||||||||  || ||||| ||| |||||||||||||| |||||| |||    
T  36641542 acatgtttgacttgacaagcatttggtcgatcacatgaactcttcatttgaggtccatga-ctttatctaactggtagtctccaattttaaagccaaatt 36641444  T
Q  362 gtgatatacttatt 375  Q
    || |||||||||||    
T  36641443 gtaatatacttatt 36641430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 36661517 - 36661371
Alignment:
Q  21 ttttcataagattgattttgcagtgataatcaacattgttactttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaac 120  Q
    |||||||| ||||| ||||||||||| | |  ||| |||||||||||||||||  ||     ||||||||| ||| ||||  |||| | ||||| |||||    
T  36661517 ttttcatatgattgtttttgcagtgacagttgacagtgttactttttctgcctttag-----taaatcatcaaataaagatgaggtcgagaagcgccaac 36661423  T
Q  121 ataacagcgactctccacttctagataatgggcagtgaagagttctcatatt 172  Q
     ||||| | |||||||||||||||||||||| ||||||||||||||||||||    
T  36661422 ctaacacctactctccacttctagataatggccagtgaagagttctcatatt 36661371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 423
Target Start/End: Original strand, 35970321 - 35970383
Alignment:
Q  360 ttgtgatatacttattcagcgaccatctcagagtatgtctcggatactatattgttgtgatata 423  Q
    |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  35970321 ttgtgatatacttatttagcgaccatctcagagtatggctcggata-tatattgttgtgatata 35970383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 36632048 - 36632135
Alignment:
Q  81 gataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctca 168  Q
    ||||||||||| ||| |||| ||||||| ||||||||||| ||||| | ||||| ||||||||||||||| ||| |||||||||||||    
T  36632048 gataaatcatcaaatgaagataaggtggagaagcaccaacctaacatcaactcttcacttctagataatgtgcattgaagagttctca 36632135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 414
Target Start/End: Original strand, 36911673 - 36911761
Alignment:
Q  324 ttcatctagctgatagtctccaattttgaagccatattgtgatatacttattcagcgaccatctcagagtatgtctcggatactatattgt 414  Q
    |||||||||||||| |||||||||||| |||||| |||||  |||||||||| ||| ||||||||||||||||| | |||||||| |||||    
T  36911673 ttcatctagctgatggtctccaattttaaagccaaattgt--tatacttatttagctaccatctcagagtatgtatgggatactaaattgt 36911761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 371
Target Start/End: Complemental strand, 36663873 - 36663768
Alignment:
Q  265 tgtttgatttgccaagcacttggtctatcacacgacctcttcatttgaggtccatgagattcatctagctgatagtctccaattttgaagccatattgtg 364  Q
    ||||||||||| ||||   ||||||||||||| ||  ||||||||||||||||||||| ||||||||| || |||||||||||||| |||| | |||||     
T  36663873 tgtttgatttgacaagtgtttggtctatcacatgagttcttcatttgaggtccatgag-ttcatctagttggtagtctccaattttaaagcgaaattgta 36663775  T
Q  365 atatact 371  Q
    |||||||    
T  36663774 atatact 36663768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 368 - 423
Target Start/End: Original strand, 35970275 - 35970330
Alignment:
Q  368 tacttattcagcgaccatctcagagtatgtctcggatactatattgttgtgatata 423  Q
    |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  35970275 tacttatttagcaaccatctcagagtatgtctgggatactatattgttgtgatata 35970330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 36911391 - 36911592
Alignment:
Q  21 ttttcataagattgattttgcagtgataatcaacattgttactttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaac 120  Q
    |||| ||| |||||||||  |||||| ||| || | |||||||||||||||||  ||||||| |||||||| | | |||| ||||||| |||||||  |     
T  36911391 tttttatatgattgatttcacagtgacaattaaaagtgttactttttctgcctttaggacgacaaatcatcaattgaagataaggtggagaagcactgat 36911490  T
Q  121 ataacagcgactctccacttctagataatg----ggcagtgaagagttctcatatttcc-tacaagttacaatgtcttctttgcaagcctttcttttaag 215  Q
     ||||  | ||| |||||||||||||||||    |  |||||||||||||||||   || |||||||||||||| ||||||||  | | |||||||||||    
T  36911491 ctaactccaactgtccacttctagataatgaactgatagtgaagagttctcataccaccttacaagttacaatgccttctttgtgaacttttcttttaag 36911590  T
Q  216 at 217  Q
    ||    
T  36911591 at 36911592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 29678661 - 29678768
Alignment:
Q  57 tgttactttttctgcctacaggacgataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagt 156  Q
    ||||||||||||  |||  |||| |||||||| || ||| |||| |||| || ||||||||||| |||||   |||||| |||||||||||| |||||||    
T  29678661 tgttactttttccacctttaggaagataaatcgtcaaatgaagataaggcggagaagcaccaacctaacacaaactctcaacttctagataaagggcagt 29678760  T
Q  157 gaagagtt 164  Q
    ||||||||    
T  29678761 gaagagtt 29678768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 18361845 - 18361935
Alignment:
Q  81 gataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatat 171  Q
    ||||||||||| ||| |||| ||||| | ||||| ||||| | ||||  ||||||||||||| |||||||||||||||| |||| ||||||    
T  18361845 gataaatcatctaatgaagataaggttgagaagctccaaccttacagaaactctccacttcttgataatgggcagtgaaaagttatcatat 18361935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 36601082 - 36600992
Alignment:
Q  81 gataaatcatccaatcaagagaaggtggggaagcaccaacataacagcgactctccacttctagataatgggcagtgaagagttctcatat 171  Q
    ||||||||||| ||| |||| ||||| | ||||| ||||| | ||||  ||||||||||||| |||||||||||||||| |||| ||||||    
T  36601082 gataaatcatctaatgaagataaggttgagaagctccaaccttacagaaactctccacttcttgataatgggcagtgaaaagttatcatat 36600992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 35970389 - 35970426
Alignment:
Q  377 agcgaccatctcagagtatgtctcggatactatattgt 414  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  35970389 agcgaccatcttagagtatgtctcagatactatattgt 35970426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 43429103 - 43429071
Alignment:
Q  308 tttgaggtccatgagattcatctagctgatagt 340  Q
    |||||||||||||||||||||||||||| ||||    
T  43429103 tttgaggtccatgagattcatctagctggtagt 43429071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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