View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355_1D_low_10 (Length: 400)
Name: NF1355_1D_low_10
Description: NF1355_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355_1D_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 387
Target Start/End: Original strand, 18444525 - 18444897
Alignment:
| Q |
7 |
ctagacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgagcattgatatcaaacaaat |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18444525 |
ctagacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctc------------catatggttaacacgagcattgatatcaaacaaat |
18444612 |
T |
|
| Q |
107 |
tactgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaagaaactacatcttggaaga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18444613 |
tactgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaaaagaagaaactacatcttggaaga |
18444712 |
T |
|
| Q |
207 |
aatgtaaaccttccacgtctgttttgtgcctcctgctatttgaaaacttcacaaatgtgctcacacatgaacgtgccatgcaaaat----agcctcacca |
302 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| | |
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| T |
18444713 |
aatgtaaaccttcggcgtctgttttgtgcctcctgctatttgaaaacttcacaaatgtgcgcacacatgaacgtgccgcgcaaaatagccagcctcacaa |
18444812 |
T |
|
| Q |
303 |
gcctttacttcccatccatgttaatcggataacaatcgtcaacataaaaagccttttgagagtcattgtgaatttattaaaagaa |
387 |
Q |
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| T |
18444813 |
gtccttacttcccatccatgtgaatcggataacaatcgtcaacataaaaagccttttgagagtcattgtgaatttattaaaagaa |
18444897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 387
Target Start/End: Original strand, 33486509 - 33486889
Alignment:
| Q |
7 |
ctagacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgagcattgatatcaaacaaat |
106 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| || |||||||| ||||||||| || || || |||| |
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| T |
33486509 |
ctagacacatttccatatgtagtagaatcaatgacatatcggggatgtccttcgaccaatctactcgtatggttagcacgagcatcaatgtctaagaaat |
33486608 |
T |
|
| Q |
107 |
tactgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaagaaactacatcttggaaga |
206 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| ||| |||||||| ||| |||||||| | |
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| T |
33486609 |
aactgcaattttctttgctatatttggtattaaaacaggccaagtcagcaaaaaggaagaaacatcaagcaaacaaaagaagaaattacgtcttggaata |
33486708 |
T |
|
| Q |
207 |
aatgtaaaccttccacgtctgttttgtgcctcctgctatttgaaaacttcacaaatgtgctcacacatgaacgtgccatgcaaaatagcctcaccagcct |
306 |
Q |
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| T |
33486709 |
aatgtaaaccttccgcgtctgttgtgtgcctcctgctgctctaaaacttcaccaatgtactcacacacaaacgtgccacgcaaaatagcttcaccagccc |
33486808 |
T |
|
| Q |
307 |
ttacttcccatccatgttaatcggataacaatcgtcaacataaaaagccttttgagagtcattgtgaatttattaaaagaa |
387 |
Q |
| |
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||||| | |||| ||| |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33486809 |
ttactccgaatccctgtgaatcagataacaaacgtcaacataaaaagctttttgagagtcattgtgaatttattaaaagaa |
33486889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 319
Target Start/End: Original strand, 33514867 - 33515176
Alignment:
| Q |
7 |
ctagacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgagcattgatatcaaacaaat |
106 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||||| || | || |||| ||||| | |||||| ||||||||||||| | |||| | |||| |
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| T |
33514867 |
ctagacacatttccatatctagtagaatcaatgacatatcgagcctctctttcgatcaatcgactcatatcattaacacgagcatcaacatcatagaaat |
33514966 |
T |
|
| Q |
107 |
tactgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaagaaactacatcttggaaga |
206 |
Q |
| |
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| T |
33514967 |
aatcgcaatgttcttttccatatctggtattgacacagaccatgtcagtaaaaattaagaatcatcaaccaactaa---atgaaattatatcttgaaaga |
33515063 |
T |
|
| Q |
207 |
aatgtaaaccttccacgtctgttttgtgcctcctgctatttgaaaacttcacaaatgtgctcacacatgaacgtgccatgcaaaatagcctcaccagcct |
306 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||| | ||||| || | ||||| |||||||| || ||||| || |||||||||||| |||| |
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| T |
33515064 |
aatgtaaacctttcacgtctgttgcgtgcctcttgctcgtctaaaacctctccaatgtactcacacacaaatgtgccgcgcgaaatagcctcacaagccc |
33515163 |
T |
|
| Q |
307 |
ttacttcccatcc |
319 |
Q |
| |
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|||| ||||||| |
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| T |
33515164 |
ttacaccccatcc |
33515176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 55444334 - 55444641
Alignment:
| Q |
9 |
agacacatttccatatgtagtagaagcaatgacatatcgggcatgtccctcgaccaatctattcatatggttaacacgagcattgatatcaaacaaatta |
108 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| |||| |||| |||| |||| ||||| | |||| | ||||||||||||| | | || | |||| | |
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| T |
55444334 |
agacacatttccatatctagtagaatcaatgatatattgggcctgtctttcgatcaatcgactcatgtcattaacacgagcatcaacaacatagaaataa |
55444433 |
T |
|
| Q |
109 |
ctgcaattttctttgctatatctggtattaaaataggccaagtcagtaaaaaggaagaaacatcaagcaaccaagagaagaaactacatcttggaagaaa |
208 |
Q |
| |
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||||||| ||||| | ||| |||||||| | |||| ||| ||||||||||| ||||||||||| |||| || || |||||| |||||| |||||| |
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| T |
55444434 |
ctgcaatgttcttctccataactggtattgacatagaccatgtcagtaaaaatccagaaacatcaaccaactaa---aataaactatatcttgaaagaaa |
55444530 |
T |
|
| Q |
209 |
tgtaaaccttccacgtctgttttgtgcctcctgctatttgaaaacttcacaaatgtgctcacacatgaacgtgccatgcaaaatagcctcaccagccttt |
308 |
Q |
| |
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| |||||||| | |||||| |||||||| |||| || ||||| || | ||||| |||||||| || || || || |||||||||| |||||| || |
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| T |
55444531 |
tttaaaccttttgcatctgttgtgtgcctcttgctcttctaaaacctctccaatgtactcacacacaaatgttccgcgcgaaatagcctcgccagccctt |
55444630 |
T |
|
| Q |
309 |
acttcccatcc |
319 |
Q |
| |
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|| ||||||| |
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|
| T |
55444631 |
acaccccatcc |
55444641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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